Browse Element(s) Details


Os.3924.1.S1_at

Description gb:AB111915.1
DB_XREF= gi:40714350
GEN=OsRPA14
TID=Os.3924.1
CNT=15
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.3924 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) OsRPA14 mRNA for replication protein A 14kDa, complete cds.
PROD=replication protein A 14kDa
FL= gb:AB111915.1 gb:AK058837.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1498010/11pollen-specific protein, putative, expressed
LOC_Os03g530801/11Zinc finger, C3HC4 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g14932Os.64.2.S1_x_at11/111+8363991..8372203NAK-like ser/thr protein kinase, putative, expressed
LOC_Os01g14932Os.64.1.S1_at10/111+8363991..8372203NAK-like ser/thr protein kinase, putative, expressed
LOC_Os01g14932OsAffx.30458.1.S1_x_at1/111+8363991..8372203NAK-like ser/thr protein kinase, putative, expressed
LOC_Os01g14940OsAffx.23252.1.S1_at11/111+8376855..8377388pectinesterase inhibitor domain containing protein, expressed
LOC_Os01g14950Os.3405.1.S1_at11/111+8378917..8384036Importin alpha-1b subunit, putative, expressed
LOC_Os01g14960Os.30390.1.S1_at11/111+8384391..8385661expressed protein
LOC_Os01g14970OsAffx.11058.1.S1_x_at11/111+8391321..8392277hypothetical protein
LOC_Os01g14980Os.3924.1.S1_at10/111+8393302..8395386pollen-specific protein, putative, expressed
LOC_Os01g14990OsAffx.22225.2.S1_at11/111+8398350..8399127hypothetical protein
LOC_Os01g14990OsAffx.22225.2.S1_s_at11/111+8398350..8399127hypothetical protein
LOC_Os01g15000Os.3927.1.S1_x_at11/111+8401049..8405176lipase class 3 family protein, putative, expressed
LOC_Os01g15000Os.3927.3.S1_x_at11/111+8401049..8405176lipase class 3 family protein, putative, expressed
LOC_Os01g15000Os.3927.2.S1_s_at11/111+8401049..8405176lipase class 3 family protein, putative, expressed
LOC_Os01g15010Os.10633.1.S1_at11/111+8410651..8415751GTP-binding protein SAR1A, putative, expressed
LOC_Os01g15010OsAffx.23253.1.S1_at9/111+8410651..8415751GTP-binding protein SAR1A, putative, expressed
LOC_Os01g15010OsAffx.7494.1.S1_at1/111+8410651..8415751GTP-binding protein SAR1A, putative, expressed
LOC_Os01g15020Os.46044.1.S1_s_at11/111+8417793..8427082WD-40 repeat family protein, putative, expressed
LOC_Os01g15020Os.46044.2.S1_x_at11/111+8417793..8427082WD-40 repeat family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.3924.1.S1_at--1152--1131Chr01:8394688..8394712 (25 bp)
AGTCCACCGATGGTCATCAGCTAAC
LOC_Os01g14980
Os.3924.1.S1_at--622--4531Chr01:8394644..8394668 (25 bp)
GCCCCTATGTCGCACTATGTGGAGA
LOC_Os01g14980
Os.3924.1.S1_at--1132--8431Chr01:8394594..8394618 (25 bp)
GGCCATCCGGGCTGAAGTTTGCACA
LOC_Os01g14980
Os.3924.1.S1_at--296--7331NONE
GTGAAAACTTCGATCCTGCACCATT
NONE
Os.3924.1.S1_at--844--6691Chr01:8393635..8393659 (25 bp)
GTTCCTGTAGAGGTCGGCATCACAT
LOC_Os01g14980
Os.3924.1.S1_at--257--6531Chr01:8393572..8393596 (25 bp)
GATTTCTCTAGCTTTAAGATCCGTC
LOC_Os01g14980
Os.3924.1.S1_at--463--2771Chr01:8393557..8393581 (25 bp)
AAGATCCGTCCAACTGTTTTTGTCA
LOC_Os01g14980
Os.3924.1.S1_at--262--3251Chr01:8393454..8393478 (25 bp)
CAAGCGTGTGCTTTTGTTGCTGAAG
LOC_Os01g14980
Os.3924.1.S1_at--858--1631Chr01:8393390..8393414 (25 bp)
AGCGTTGTGCTGCATTGTTACTGTC
LOC_Os01g14980
Os.3924.1.S1_at--829--6772Chr05:19916889..19916975 (25 bp)
GTTACTGTCGCTTGCATTTGGATCC
NONE
Os.3924.1.S1_at--477--3892Chr03:30394676..30394816 (25 bp)
CTGTGTTTCTTGTTATGCTCTCCGG
LOC_Os03g53080
Target Sequence 
AGTCCACCGATGGTCATCAGCTAACCATCAAAGGGGCCTCCGGTGCCCCTATGTCGCACTATGTGGAGATTATTGGGATC
GCTGAACCCAATCAGGCCATCCGGGCTGAAGTTTGCACAGATTTTGGTGAAAACTTCGATCCTGCACCATTCAATGGACT
GTGCAAGCTTGCGAATGGCCAGATGAAGGATTTGTTCCTGTAGAGGTCGGCATCACATACAAGACATTCTGCCAACAAAG
CATGTCTCATGTTCATGATTTCTCTAGCTTTAAGATCCGTCCAACTGTTTTTGTCAGTCATCTCAGTATAATCAAGCTAC
TTAGGGTCAGTATTGGTGCTTATTAAGACATATTAACCTTAAGCTATGTGAGGACAAGCGTGTGCTTTTGTTGCTGAAGA
GCTTGTGGTGTTTGCTCCTTCTAAGCAAAGCAAACCAAAGCGTTGTGCTGCATTGTTACTGTCGCTTGCATTTGGATCCT
TGAAAGCTGTGTTTCTTGTTATGCTCTCCGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.3924.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis