Browse Element(s) Details


Os.7348.2.S1_x_at

Description gb:AK061757.1
DB_XREF= gi:32971775
TID=Os.7348.2
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7348 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013030H15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-039-A06, full insert sequence.
FL= gb:AK061757.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3891011/11O-methyltransferase family protein, expressed
LOC_Os01g150391/11pectinesterase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g38870NANA8+24435642..24435905hypothetical protein
LOC_Os08g38880Os.9948.1.S1_at11/118+24442796..24446513WD-40 repeat family protein, putative, expressed
LOC_Os08g38890Os.48412.1.A1_at11/118+24448492..24450852expressed protein
LOC_Os08g38900Os.4244.1.S1_at11/118+24453660..24455126Caffeoyl-CoA O-methyltransferase 1, putative, expressed
LOC_Os08g38910Os.7348.1.S1_a_at11/118+24460298..24464682O-methyltransferase family protein, expressed
LOC_Os08g38910Os.7348.1.S1_at11/118+24460298..24464682O-methyltransferase family protein, expressed
LOC_Os08g38910Os.7348.2.S1_x_at11/118+24460298..24464682O-methyltransferase family protein, expressed
LOC_Os08g38920Os.54776.1.S1_at4/118+24465063..24465978Caffeoyl-CoA O-methyltransferase 2, putative
LOC_Os08g38930OsAffx.20329.1.S1_at2/118+24468548..24470660retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g38940Os.46862.1.S1_at3/118+24474728..24479270retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g38940Os.20177.1.S1_at1/118+24474728..24479270retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g38950NANA8+24480412..24480744hypothetical protein
LOC_Os08g38960Os.55128.1.S1_at11/118+24488537..24489985expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009809biological_processlignin biosynthesis
GO:0005829cellular_componentcytosol
GO:0009505cellular_componentcell wall (sensu Magnoliophyta)
GO:0030599molecular_functionpectinesterase activity
GO:0042409molecular_functioncaffeoyl-CoA O-methyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7348.2.S1_x_at--1040--9291Chr08:24461106..24461130 (25 bp)
TCCCCGTCATCAAGAAGGCCGGCGT
LOC_Os08g38910
Os.7348.2.S1_x_at--623--1471Chr08:24461094..24461118 (25 bp)
AGAAGGCCGGCGTCGCCCACAAGGT
LOC_Os08g38910
Os.7348.2.S1_x_at--106--2612Chr08:24460948..24461056 (25 bp)
AACCTCCTCGCCAACGAGGAGAACG
LOC_Os08g38910
Os.7348.2.S1_x_at--94--1951Chr08:24460878..24460902 (25 bp)
ACGGCGAGTACCACGAGCGGCTGCT
LOC_Os08g38910
Os.7348.2.S1_x_at--303--4471Chr08:24460650..24460674 (25 bp)
GCCTCGTTTGAGATCGGCGCAAGCC
LOC_Os08g38910
Os.7348.2.S1_x_at--181--5271Chr08:24460572..24460596 (25 bp)
GAATGGACCCCCCAAATGGGCCTGA
LOC_Os08g38910
Os.7348.2.S1_x_at--1052--10051Chr08:24460543..24460567 (25 bp)
TAGTATAAATAAGCAGCTGCACTGC
LOC_Os08g38910
Os.7348.2.S1_x_at--1096--5091Chr08:24460525..24460549 (25 bp)
GCACTGCAATTATATCGTAGCCTTT
LOC_Os08g38910
Os.7348.2.S1_x_at--556--511Chr08:24460512..24460536 (25 bp)
ATCGTAGCCTTTGTATGTTTTTCAT
LOC_Os08g38910
Os.7348.2.S1_x_at--1085--731Chr08:24460498..24460522 (25 bp)
ATGTTTTTCATGCAGGTTTGTGTCT
LOC_Os08g38910
Os.7348.2.S1_x_at--180--3531Chr08:24460490..24460514 (25 bp)
CATGCAGGTTTGTGTCTGAGAACAA
LOC_Os08g38910
Target Sequence 
TCCCCGTCATCAAGAAGGCCGGCGTCGCCCACAAGGTCGACTTCCGCGAGGGCGCCGCCATGCCCATCCTCGACAACCTC
CTCGCCAACGAGGAGAACGAGGGGAAGTTCGACTTCGCGTTCGTGGACGCCGACAAGGGGAACTACGGCGAGTACCACGA
GCGGCTGCTGCGGCTGGTGCGCGCCGGCGGCGTGCTGGCCTACGACAACACGCTCTGGGGCGGGTCCGTGGCGCTGGAGG
ACGACTCCGTGCTGGAGGAGTTCGACCAGGACATCCGCCGCTCCATCGTGGCCTTCAACGCCAAGATCGCCGGCGACCCG
CGCGTGGAGGCCGTGCAGCTCCCGGTCTCCGACGGCATCACCCTCTGCCGCCGCCTCGTTTGAGATCGGCGCAAGCCGTG
TGCGAAGCACTGATCTCGGGGAGACTGAAGTGGGGCTGGATTTGGGCTTTGAATGGACCCCCCAAATGGGCCTGAACTGT
AGTATAAATAAGCAGCTGCACTGCAATTATATCGTAGCCTTTGTATGTTTTTCATGCAGGTTTGTGTCTGAGAACAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7348.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis