Browse Element(s) Details


Os.55128.1.S1_at

Description gb:AK107539.1
DB_XREF= gi:32992748
TID=Os.55128.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55128 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-129-H07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-129-H07, full insert sequence.
FL= gb:AK107539.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3896011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g38910Os.7348.1.S1_a_at11/118+24460298..24464682O-methyltransferase family protein, expressed
LOC_Os08g38910Os.7348.1.S1_at11/118+24460298..24464682O-methyltransferase family protein, expressed
LOC_Os08g38910Os.7348.2.S1_x_at11/118+24460298..24464682O-methyltransferase family protein, expressed
LOC_Os08g38920Os.54776.1.S1_at4/118+24465063..24465978Caffeoyl-CoA O-methyltransferase 2, putative
LOC_Os08g38930OsAffx.20329.1.S1_at2/118+24468548..24470660retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g38940Os.46862.1.S1_at3/118+24474728..24479270retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g38940Os.20177.1.S1_at1/118+24474728..24479270retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g38950NANA8+24480412..24480744hypothetical protein
LOC_Os08g38960Os.55128.1.S1_at11/118+24488537..24489985expressed protein
LOC_Os08g38970OsAffx.6144.1.S1_at11/118+24501144..24504104expressed protein
LOC_Os08g38980Os.49390.1.A1_at11/118+24506167..24512773Chloride channel protein CLC-f, putative, expressed
LOC_Os08g38980OsAffx.30510.1.S1_at1/118+24506167..24512773Chloride channel protein CLC-f, putative, expressed
LOC_Os08g38990Os.27039.1.S1_at11/118+24513037..24516989WRKY DNA binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55128.1.S1_at--722--6451Chr08:24489111..24489135 (25 bp)
GATCAAGACGCGACGGGCGCCAAAC
LOC_Os08g38960
Os.55128.1.S1_at--134--1951Chr08:24488957..24488981 (25 bp)
ACTGGCTCCTCCAGGGCGGACAGAT
LOC_Os08g38960
Os.55128.1.S1_at--687--1071Chr08:24488945..24488969 (25 bp)
AGGGCGGACAGATATTCTCCCCGGG
LOC_Os08g38960
Os.55128.1.S1_at--587--6172Chr04:5577623..5577677 (25 bp)
GAGGAGTACTCCACAACGCCGGCGA
NONE
Os.55128.1.S1_at--561--2171Chr08:24488813..24488837 (25 bp)
ACACCGTGTTTGATCCCGAGCTGGT
LOC_Os08g38960
Os.55128.1.S1_at--988--1611Chr08:24488795..24488819 (25 bp)
AGCTGGTCGCGCAGTTCGAGCAAGC
LOC_Os08g38960
Os.55128.1.S1_at--551--971Chr08:24488747..24488771 (25 bp)
AGGAGCGCGTCTTGGAGAAGATCCT
LOC_Os08g38960
Os.55128.1.S1_at--805--1291Chr08:24488651..24488675 (25 bp)
AGATGCCAAGCCATCGGCCGGTGAT
LOC_Os08g38960
Os.55128.1.S1_at--574--10391Chr08:24488603..24488627 (25 bp)
TTTTGGTAGGTTTTTGCAGCCGCGC
LOC_Os08g38960
Os.55128.1.S1_at--218--6411Chr08:24488567..24488591 (25 bp)
GATCTGTAATTTTAAACCCTGTGCT
LOC_Os08g38960
Os.55128.1.S1_at--869--2371Chr08:24488554..24488578 (25 bp)
AAACCCTGTGCTTGCAAAATGTAAA
LOC_Os08g38960
Target Sequence 
GATCAAGACGCGACGGGCGCCAAACCGTCGGAGCAAGAGGAGGCCGCCACCGCCGCCGCCGGGAACAAGAGGCGGGCGAG
GGCGAGGCAGCTCGGCGAGCTGAAGGTGCCACTGCCACCGGCGTTCGACTTCTCCAAGTCCGGCAGCCTGCGCGACTGGC
TCCTCCAGGGCGGACAGATATTCTCCCCGGGCTCCTACGTCACCCCCAAGTTCGGGACGACCTCACCGGCGCCTTCGCCG
CCGCCGCCGCAAGAACGTGGAGGAGTACTCCACAACGCCGGCGAGCCGCAGCCGCAGCACACCGTGTTTGATCCCGAGCT
GGTCGCGCAGTTCGAGCAAGCCATGGAGCGGCTGTCCGAGGACGAGGAGCGCGTCTTGGAGAAGATCCTGGAAGCCATGG
GAGCGGCGGCGGAGGAGGAGGAGGAGGAGGAAGCGACGGCGACGGCGACGGCGAGGCTGGAGATGCCAAGCCATCGGCCG
GTGATGGTGGTGCAGGAGTAGGCGACGGTTTTGGTAGGTTTTTGCAGCCGCGCGTGTGTGATGTGATCTGTAATTTTAAA
CCCTGTGCTTGCAAAATGTAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55128.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis