Browse Element(s) Details


Os.54776.1.S1_at

Description gb:AK106735.1
DB_XREF= gi:32991944
TID=Os.54776.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54776 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-115-A04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-115-A04, full insert sequence.
FL= gb:AK106735.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g389204/11Caffeoyl-CoA O-methyltransferase 2, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g38880Os.9948.1.S1_at11/118+24442796..24446513WD-40 repeat family protein, putative, expressed
LOC_Os08g38890Os.48412.1.A1_at11/118+24448492..24450852expressed protein
LOC_Os08g38900Os.4244.1.S1_at11/118+24453660..24455126Caffeoyl-CoA O-methyltransferase 1, putative, expressed
LOC_Os08g38910Os.7348.1.S1_a_at11/118+24460298..24464682O-methyltransferase family protein, expressed
LOC_Os08g38910Os.7348.1.S1_at11/118+24460298..24464682O-methyltransferase family protein, expressed
LOC_Os08g38910Os.7348.2.S1_x_at11/118+24460298..24464682O-methyltransferase family protein, expressed
LOC_Os08g38920Os.54776.1.S1_at4/118+24465063..24465978Caffeoyl-CoA O-methyltransferase 2, putative
LOC_Os08g38930OsAffx.20329.1.S1_at2/118+24468548..24470660retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g38940Os.46862.1.S1_at3/118+24474728..24479270retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g38940Os.20177.1.S1_at1/118+24474728..24479270retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g38950NANA8+24480412..24480744hypothetical protein
LOC_Os08g38960Os.55128.1.S1_at11/118+24488537..24489985expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009809biological_processlignin biosynthesis
GO:0005829cellular_componentcytosol
GO:0042409molecular_functioncaffeoyl-CoA O-methyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54776.1.S1_at--304--3211Chr08:24465291..24465315 (25 bp)
CAAGGAGCAGTACCGCGGGTACCAC
LOC_Os08g38920
Os.54776.1.S1_at--22--8371Chr08:24465236..24465260 (25 bp)
GGCGTGGTCGCGTACGACAACACGC
LOC_Os08g38920
Os.54776.1.S1_at--999--7251Chr08:24465149..24465173 (25 bp)
GTGCGCGACTACATGGTCGGGTTCA
LOC_Os08g38920
Os.54776.1.S1_at--460--2111Chr08:24465139..24465163 (25 bp)
ACATGGTCGGGTTCAACGCCATGGT
LOC_Os08g38920
Os.54776.1.S1_at--27--4471Chr08:24465049..24465073 (25 bp)
GCCTCAAGTGAGATCGACCGATCGA
NONE
Os.54776.1.S1_at--317--6391Chr08:24465030..24465054 (25 bp)
GATCGATCGGGCAATCTTAGAAATG
NONE
Os.54776.1.S1_at--707--3011Chr08:24465009..24465033 (25 bp)
AATGCGCTAGAGTGTCTATACCCTC
NONE
Os.54776.1.S1_at--1147--9531Chr08:24464995..24465019 (25 bp)
TCTATACCCTCTCGGTCTCAAAATA
NONE
Os.54776.1.S1_at--791--2391Chr08:24464971..24464995 (25 bp)
AAAACAACCTCGTAGTAGTATGATG
NONE
Os.54776.1.S1_at--1041--6011Chr08:24464899..24464923 (25 bp)
GAGAGTACGTTGCTCTACTGTTGCT
NONE
Os.54776.1.S1_at--979--6671Chr08:24464880..24464904 (25 bp)
GTTGCTGTTGATCTTGTCGTACAAT
NONE
Target Sequence 
CAAGGAGCAGTACCGCGGGTACCACGAGCGGCTGGTGCGGCTGCTGCGCGTCGGCGGCGTGGTCGCGTACGACAACACGC
TGTGGGGCGGGTCCGTGGCAATGCCGCGCGACACGCCGGGGAGCTCGGCGTACGACCGCGTGGTGCGCGACTACATGGTC
GGGTTCAACGCCATGGTCGCCGCCGACGACCGCGTCGAGGCATGCCTGCTCCCCGTCGCCGACGGCGTCACGCTGTGCCG
CCGCCTCAAGTGAGATCGACCGATCGATCGGGCAATCTTAGAAATGCGCTAGAGTGTCTATACCCTCTCGGTCTCAAAAT
AAAACAACCTCGTAGTAGTATGATGTTTATTTTAGGACATTGTAATAGGTGGTTGATTTATTTTGCGTAGGAGAGAGTAC
GTTGCTCTACTGTTGCTGTTGATCTTGTCGTACAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54776.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis