Browse Element(s) Details


Os.4244.1.S1_at

Description gb:AB110168.1
DB_XREF= gi:32352133
TID=Os.4244.1
CNT=91
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.4244 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) mRNA for caffeoyl-CoA 3-O-methyltransferase, complete cds, clone: 12FPR057.
PROD=caffeoyl-CoA 3-O-methyltransferase
FL= gb:AK104801.1 gb:AK104326.1 gb:AK071482.1 gb:AB110168.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3890011/11Caffeoyl-CoA O-methyltransferase 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g38850Os.49109.1.S1_at11/118+24428050..24433246CRAL/TRIO, N-terminus family protein, expressed
LOC_Os08g38850Os.49109.1.S2_at11/118+24428050..24433246CRAL/TRIO, N-terminus family protein, expressed
LOC_Os08g38860OsAffx.23890.1.S1_at11/118+24433436..24435215hypothetical protein
LOC_Os08g38860OsAffx.23890.4.S1_x_at3/118+24433436..24435215hypothetical protein
LOC_Os08g38870NANA8+24435642..24435905hypothetical protein
LOC_Os08g38880Os.9948.1.S1_at11/118+24442796..24446513WD-40 repeat family protein, putative, expressed
LOC_Os08g38890Os.48412.1.A1_at11/118+24448492..24450852expressed protein
LOC_Os08g38900Os.4244.1.S1_at11/118+24453660..24455126Caffeoyl-CoA O-methyltransferase 1, putative, expressed
LOC_Os08g38910Os.7348.1.S1_a_at11/118+24460298..24464682O-methyltransferase family protein, expressed
LOC_Os08g38910Os.7348.1.S1_at11/118+24460298..24464682O-methyltransferase family protein, expressed
LOC_Os08g38910Os.7348.2.S1_x_at11/118+24460298..24464682O-methyltransferase family protein, expressed
LOC_Os08g38920Os.54776.1.S1_at4/118+24465063..24465978Caffeoyl-CoA O-methyltransferase 2, putative
LOC_Os08g38930OsAffx.20329.1.S1_at2/118+24468548..24470660retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g38940Os.46862.1.S1_at3/118+24474728..24479270retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g38940Os.20177.1.S1_at1/118+24474728..24479270retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0009809biological_processlignin biosynthesis
GO:0005829cellular_componentcytosol
GO:0042409molecular_functioncaffeoyl-CoA O-methyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4244.1.S1_at--283--9431Chr08:24454268..24454292 (25 bp)
TCGTGGACGCGGACAAGCCCAACTA
LOC_Os08g38900
Os.4244.1.S1_at--56--2031Chr08:24454247..24454271 (25 bp)
ACTACGTCAAGTACCACGAGCAGCT
LOC_Os08g38900
Os.4244.1.S1_at--252--9451Chr08:24454205..24454229 (25 bp)
TCGGCGGGCACATCGTGTACGACAA
LOC_Os08g38900
Os.4244.1.S1_at--1140--8711Chr08:24454136..24454160 (25 bp)
TGTCGGACCTGGACCGGAGGTTCTC
LOC_Os08g38900
Os.4244.1.S1_at--196--8031Chr08:24454121..24454145 (25 bp)
GGAGGTTCTCCGTCGCCATCAGGGA
LOC_Os08g38900
Os.4244.1.S1_at--1131--6131Chr08:24454007..24454031 (25 bp)
GAGGTCGAGACCGAGACCTTACCGG
LOC_Os08g38900
Os.4244.1.S1_at--689--571Chr08:24453975..24453999 (25 bp)
ATCCATCGCTCTCGCGTGATTAATT
LOC_Os08g38900
Os.4244.1.S1_at--446--10491Chr08:24453952..24453976 (25 bp)
TTAACGTGTGTTGCTGTACTCTTCT
LOC_Os08g38900
Os.4244.1.S1_at--56--7011Chr08:24453937..24453961 (25 bp)
GTACTCTTCTACTGCTACAACTATA
LOC_Os08g38900
Os.4244.1.S1_at--300--10191Chr08:24453911..24453935 (25 bp)
TATTACTTCCTTAATTGCCGCTTAA
LOC_Os08g38900
Os.4244.1.S1_at--624--4491Chr08:24453895..24453919 (25 bp)
GCCGCTTAAATTTTCCTATACGTGT
LOC_Os08g38900
Target Sequence 
TCGTGGACGCGGACAAGCCCAACTACGTCAAGTACCACGAGCAGCTGCTGCAGCTGGTGCGCGTCGGCGGGCACATCGTG
TACGACAACACGCTGTGGGCCGGCACGGTGGCGCTGCCGCCGGACACGCCGCTGTCGGACCTGGACCGGAGGTTCTCCGT
CGCCATCAGGGACCTCAACTCCAGGCTCGCCGCCGACCCGCGCATCGACGTCTGCCAGCTCGCCATCGCCGACGGCATCA
CCATCTGCCGCCGCCTCGTGTGAGGTCGAGACCGAGACCTTACCGGCCGATCCATCCATCGCTCTCGCGTGATTAATTAA
CGTGTGTTGCTGTACTCTTCTACTGCTACAACTATACTATTACTTCCTTAATTGCCGCTTAAATTTTCCTATACGTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4244.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis