Browse Element(s) Details


Os.7348.1.S1_a_at

Description gb:AK065515.1
DB_XREF= gi:32975533
TID=Os.7348.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.7348 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013030H15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013030H15, full insert sequence.
FL= gb:AK065515.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3891011/11O-methyltransferase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g38870NANA8+24435642..24435905hypothetical protein
LOC_Os08g38880Os.9948.1.S1_at11/118+24442796..24446513WD-40 repeat family protein, putative, expressed
LOC_Os08g38890Os.48412.1.A1_at11/118+24448492..24450852expressed protein
LOC_Os08g38900Os.4244.1.S1_at11/118+24453660..24455126Caffeoyl-CoA O-methyltransferase 1, putative, expressed
LOC_Os08g38910Os.7348.1.S1_a_at11/118+24460298..24464682O-methyltransferase family protein, expressed
LOC_Os08g38910Os.7348.1.S1_at11/118+24460298..24464682O-methyltransferase family protein, expressed
LOC_Os08g38910Os.7348.2.S1_x_at11/118+24460298..24464682O-methyltransferase family protein, expressed
LOC_Os08g38920Os.54776.1.S1_at4/118+24465063..24465978Caffeoyl-CoA O-methyltransferase 2, putative
LOC_Os08g38930OsAffx.20329.1.S1_at2/118+24468548..24470660retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g38940Os.46862.1.S1_at3/118+24474728..24479270retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g38940Os.20177.1.S1_at1/118+24474728..24479270retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g38950NANA8+24480412..24480744hypothetical protein
LOC_Os08g38960Os.55128.1.S1_at11/118+24488537..24489985expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009809biological_processlignin biosynthesis
GO:0005829cellular_componentcytosol
GO:0042409molecular_functioncaffeoyl-CoA O-methyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7348.1.S1_a_at--504--4531Chr08:24460653..24460677 (25 bp)
GCCGCCTCGTTTGAGATCGGCGCAA
LOC_Os08g38910
Os.7348.1.S1_a_at--180--5271Chr08:24460572..24460596 (25 bp)
GAATGGACCCCCCAAATGGGCCTGA
LOC_Os08g38910
Os.7348.1.S1_a_at--153--351Chr08:24460539..24460563 (25 bp)
ATAAATAAGCAGCTGCACTGCAATT
LOC_Os08g38910
Os.7348.1.S1_a_at--384--5071Chr08:24460531..24460555 (25 bp)
GCAGCTGCACTGCAATTATATCGTA
LOC_Os08g38910
Os.7348.1.S1_a_at--1095--5091Chr08:24460525..24460549 (25 bp)
GCACTGCAATTATATCGTAGCCTTT
LOC_Os08g38910
Os.7348.1.S1_a_at--511--251Chr08:24460514..24460538 (25 bp)
ATATCGTAGCCTTTGTATGTTTTTC
LOC_Os08g38910
Os.7348.1.S1_a_at--5--9411Chr08:24460511..24460535 (25 bp)
TCGTAGCCTTTGTATGTTTTTCATG
LOC_Os08g38910
Os.7348.1.S1_a_at--121--9991Chr08:24460508..24460532 (25 bp)
TAGCCTTTGTATGTTTTTCATGCAG
LOC_Os08g38910
Os.7348.1.S1_a_at--1084--731Chr08:24460498..24460522 (25 bp)
ATGTTTTTCATGCAGGTTTGTGTCT
LOC_Os08g38910
Os.7348.1.S1_a_at--451--3471Chr08:24460486..24460510 (25 bp)
CAGGTTTGTGTCTGAGAACAAAAAT
LOC_Os08g38910
Os.7348.1.S1_a_at--718--10471Chr08:24460462..24460486 (25 bp)
TTAAATTCTAGAGTGATGTTTTATC
LOC_Os08g38910
Target Sequence 
GCCGCCTCGTTTGAGATCGGCGCAAGCCGTGTGCGAAGCACTGATCTCGGGGAGACTGAAGTGGGGCTGGATTTGGGCTT
TGAATGGACCCCCCAAATGGGCCTGAACTGTAGTATAAATAAGCAGCTGCACTGCAATTATATCGTAGCCTTTGTATGTT
TTTCATGCAGGTTTGTGTCTGAGAACAAAAATTAAATTCTAGAGTGATGTTTTATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7348.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis