Browse Element(s) Details


Os.48412.1.A1_at

Description gb:AK071174.1
DB_XREF= gi:32981197
TID=Os.48412.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.48412 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023085C17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023085C17, full insert sequence.
FL= gb:AK071174.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3889011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g38850Os.49109.1.S1_at11/118+24428050..24433246CRAL/TRIO, N-terminus family protein, expressed
LOC_Os08g38850Os.49109.1.S2_at11/118+24428050..24433246CRAL/TRIO, N-terminus family protein, expressed
LOC_Os08g38860OsAffx.23890.1.S1_at11/118+24433436..24435215hypothetical protein
LOC_Os08g38860OsAffx.23890.4.S1_x_at3/118+24433436..24435215hypothetical protein
LOC_Os08g38870NANA8+24435642..24435905hypothetical protein
LOC_Os08g38880Os.9948.1.S1_at11/118+24442796..24446513WD-40 repeat family protein, putative, expressed
LOC_Os08g38890Os.48412.1.A1_at11/118+24448492..24450852expressed protein
LOC_Os08g38900Os.4244.1.S1_at11/118+24453660..24455126Caffeoyl-CoA O-methyltransferase 1, putative, expressed
LOC_Os08g38910Os.7348.1.S1_a_at11/118+24460298..24464682O-methyltransferase family protein, expressed
LOC_Os08g38910Os.7348.1.S1_at11/118+24460298..24464682O-methyltransferase family protein, expressed
LOC_Os08g38910Os.7348.2.S1_x_at11/118+24460298..24464682O-methyltransferase family protein, expressed
LOC_Os08g38920Os.54776.1.S1_at4/118+24465063..24465978Caffeoyl-CoA O-methyltransferase 2, putative
LOC_Os08g38930OsAffx.20329.1.S1_at2/118+24468548..24470660retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g38940Os.46862.1.S1_at3/118+24474728..24479270retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g38940Os.20177.1.S1_at1/118+24474728..24479270retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.48412.1.A1_at--391--2311Chr08:24449050..24449074 (25 bp)
AAAGGATCCTGAGTCCAGACCAGAA
LOC_Os08g38890
Os.48412.1.A1_at--650--5371Chr08:24449028..24449052 (25 bp)
GAAGAAGCATCTTACCTTGGTCGGC
LOC_Os08g38890
Os.48412.1.A1_at--1106--2191Chr08:24448959..24448983 (25 bp)
ACAAGAGCTGCTCAAACCTGGGCAC
LOC_Os08g38890
Os.48412.1.A1_at--976--8631Chr08:24448941..24448965 (25 bp)
TGGGCACCTCTAGTTGACGATCAAA
LOC_Os08g38890
Os.48412.1.A1_at--70--3111Chr08:24448918..24448942 (25 bp)
AATAGCTCTCTATAACGCGCAGAAA
LOC_Os08g38890
Os.48412.1.A1_at--215--1551Chr08:24448853..24448877 (25 bp)
AGCATACCAAGAACCGAGCGGCGAT
LOC_Os08g38890
Os.48412.1.A1_at--865--1211Chr08:24448776..24448800 (25 bp)
AGTTCAGAAGTCCTGCGGTTGCAGT
LOC_Os08g38890
Os.48412.1.A1_at--389--8731Chr08:24448693..24448717 (25 bp)
TGTAGGAACCTTTCTTGCACGGCTC
LOC_Os08g38890
Os.48412.1.A1_at--1019--8751Chr08:24448648..24448672 (25 bp)
TGTACCTACTTGAGCTTAGAGCCAT
LOC_Os08g38890
Os.48412.1.A1_at--894--5851Chr08:24448630..24448654 (25 bp)
GAGCCATGGAATCACCGATACACGA
LOC_Os08g38890
Os.48412.1.A1_at--1076--1411Chr08:24448496..24448520 (25 bp)
AGAAATCTCTGGCTCAGCAGTCCTG
LOC_Os08g38890
Target Sequence 
AAAGGATCCTGAGTCCAGACCAGAAGAAGCATCTTACCTTGGTCGGCTCTTCCTGGAGAAGACAGAAGCCGAGATTAAGA
GCATCATCCTGACAAGAGCTGCTCAAACCTGGGCACCTCTAGTTGACGATCAAATAGCTCTCTATAACGCGCAGAAATCT
CTGTCGGGGGATTACAAGCAGCTTGAACTTAAACTACAGCATACCAAGAACCGAGCGGCGATGTTAGAAGAGATGGCGGA
GAAGCTAAGAGCTGAATGCAGAGTTCTGTCTGGGAGTTCAGAAGTCCTGCGGTTGCAGTCTAGAGCAAGCAGAGTTTCAC
TCTTTTGTTTCATCCAGTTTGTTCTGCTGTTTACTGCTGTAGGAACCTTTCTTGCACGGCTCTTGCCCTCTCCTACTGAG
TATGTACCTACTTGAGCTTAGAGCCATGGAATCACCGATACACGATACATATGCATCAGGAAATAGAACTTGCTTTCATA
AATTTTCCCTTGTACGGAGTAGTATTTTAGGACATGAAGCTTGTAAATTTTCTTTGTAACTATGTTTTCGGAAAAGAAAT
CTCTGGCTCAGCAGTCCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.48412.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis