Browse Element(s) Details


Os.27039.1.S1_at

Description gb:AK065518.1
DB_XREF= gi:32975536
TID=Os.27039.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.27039 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013025I24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013025I24, full insert sequence.
FL= gb:AK062027.1 gb:AK065518.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3899011/11WRKY DNA binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g38960Os.55128.1.S1_at11/118+24488537..24489985expressed protein
LOC_Os08g38970OsAffx.6144.1.S1_at11/118+24501144..24504104expressed protein
LOC_Os08g38980Os.49390.1.A1_at11/118+24506167..24512773Chloride channel protein CLC-f, putative, expressed
LOC_Os08g38980OsAffx.30510.1.S1_at1/118+24506167..24512773Chloride channel protein CLC-f, putative, expressed
LOC_Os08g38990Os.27039.1.S1_at11/118+24513037..24516989WRKY DNA binding domain containing protein, expressed
LOC_Os08g39000OsAffx.6079.1.S1_at11/118+24524268..24525428expressed protein
LOC_Os08g39010OsAffx.17414.1.S1_at11/118+24526948..24527899hypothetical protein
LOC_Os08g39010Os.21836.1.S1_at1/118+24526948..24527899hypothetical protein
LOC_Os08g39020NANA8+24531947..24532315expressed protein
LOC_Os08g39030Os.49880.2.S1_at11/118+24532990..24535594expressed protein
LOC_Os08g39030Os.49880.2.S1_x_at10/118+24532990..24535594expressed protein
LOC_Os08g39040Os.49880.1.S1_at5/118+24536471..24538103expressed protein
LOC_Os08g39050Os.47921.1.A1_at11/118+24540287..24543440pentatricopeptide, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27039.1.S1_at--287--10691Chr08:24513587..24513611 (25 bp)
TTCCAGCTGCCAGGAACAGTGGCCA
LOC_Os08g38990
Os.27039.1.S1_at--496--1711Chr08:24513538..24513562 (25 bp)
ACCACAGGCTACCAATGGTCTTCTT
LOC_Os08g38990
Os.27039.1.S1_at--385--9991Chr08:24513529..24513553 (25 bp)
TACCAATGGTCTTCTTCACCGGAGA
LOC_Os08g38990
Os.27039.1.S1_at--214--1731Chr08:24513505..24513529 (25 bp)
ACCTGAACCGGCACAAGGTGGTGGT
LOC_Os08g38990
Os.27039.1.S1_at--927--10591Chr08:24513402..24513426 (25 bp)
TTCTCCTTTGGAATGCTGCCTCGTA
LOC_Os08g38990
Os.27039.1.S1_at--395--6991Chr08:24513325..24513349 (25 bp)
GTACCCAGGGCTTGTGCTGCCGAGA
LOC_Os08g38990
Os.27039.1.S1_at--579--8971Chr08:24513287..24513311 (25 bp)
TGAACTTGCTGCCACAGTCTGGGAA
LOC_Os08g38990
Os.27039.1.S1_at--915--2131Chr08:24513274..24513298 (25 bp)
ACAGTCTGGGAATGCTGGTGCAGCA
LOC_Os08g38990
Os.27039.1.S1_at--712--10351Chr08:24513146..24513170 (25 bp)
TTTTTGGTGCTTTTGTTAGGAGAAT
LOC_Os08g38990
Os.27039.1.S1_at--614--10231Chr08:24513114..24513138 (25 bp)
TATTGTAGCTCAATTTACTTTCGGG
LOC_Os08g38990
Os.27039.1.S1_at--1093--5031Chr08:24513079..24513103 (25 bp)
GCAGATAGTTCAGGCAATTGTAGGT
LOC_Os08g38990
Target Sequence 
TTCCAGCTGCCAGGAACAGTGGCCACCCAAGCTCAGGNTCAGCCGCTGCACCACAGGCTACCAATGGTCTTCTTCACCGG
AGACCTGAACCGGCACAAGGTGGTGGTGGTGGTAGCCTTGCTCAGTTTGGCTATGGCTCAGCTGGTCACAGACCAGCAGA
GCAGTTTGGTGCAGCAGCAGCTGGTTTCTCCTTTGGAATGCTGCCTCGTAGCATTGCAACTCCGGCGCCGTCTCCGGCGA
TCGCCGTGCCGGCGATGCAGGGGTACCCAGGGCTTGTGCTGCCGAGAGGTGAGATGAAGGTGAACTTGCTGCCACAGTCT
GGGAATGCTGGTGCAGCAGCTAGCCAGCAGCTGATGGGCAGGTTGCCAAAGCAGCATCCTCAGATGTAAAAATGGCAGGA
ACATGAGACAAATGGTGTTTGCTGCTTATGTATATGAAACATTTTTGGTGCTTTTGTTAGGAGAATGGAGTGTTATTGTA
GCTCAATTTACTTTCGGGGGAAAAAAAAGCAGATAGTTCAGGCAATTGTAGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27039.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis