Browse Element(s) Details


Os.49880.2.S1_x_at

Description gb:AK109726.1
DB_XREF= gi:32994935
TID=Os.49880.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49880 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-146-B08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-146-B08, full insert sequence.
FL= gb:AK109726.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3903010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g38980Os.49390.1.A1_at11/118+24506167..24512773Chloride channel protein CLC-f, putative, expressed
LOC_Os08g38980OsAffx.30510.1.S1_at1/118+24506167..24512773Chloride channel protein CLC-f, putative, expressed
LOC_Os08g38990Os.27039.1.S1_at11/118+24513037..24516989WRKY DNA binding domain containing protein, expressed
LOC_Os08g39000OsAffx.6079.1.S1_at11/118+24524268..24525428expressed protein
LOC_Os08g39010OsAffx.17414.1.S1_at11/118+24526948..24527899hypothetical protein
LOC_Os08g39010Os.21836.1.S1_at1/118+24526948..24527899hypothetical protein
LOC_Os08g39020NANA8+24531947..24532315expressed protein
LOC_Os08g39030Os.49880.2.S1_at11/118+24532990..24535594expressed protein
LOC_Os08g39030Os.49880.2.S1_x_at10/118+24532990..24535594expressed protein
LOC_Os08g39040Os.49880.1.S1_at5/118+24536471..24538103expressed protein
LOC_Os08g39050Os.47921.1.A1_at11/118+24540287..24543440pentatricopeptide, putative, expressed
LOC_Os08g39060Os.19370.1.S1_at11/118+24544740..24547524Leucine Rich Repeat family protein, expressed
LOC_Os08g39070Os.25647.1.S1_at11/118+24548335..24551686COP9 signalosome complex subunit 6a, putative, expressed
LOC_Os08g39080Os.28195.1.S1_a_at11/118+24552443..24561690peroxisomal targeting signal 1 receptor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49880.2.S1_x_at--432--7991Chr08:24533797..24533821 (25 bp)
GGATGTTCCACCTGTCGATGAAGAT
LOC_Os08g39030
Os.49880.2.S1_x_at--536--1651Chr08:24533958..24533982 (25 bp)
AGCCCGGCCCAGTTATCAAGAAGAG
LOC_Os08g39030
Os.49880.2.S1_x_at--85--2231Chr08:24534053..24534077 (25 bp)
ACAATCGTCTTCAAGCTTCGGGTTC
LOC_Os08g39030
Os.49880.2.S1_x_at--923--6131Chr08:24534106..24534130 (25 bp)
GAGGGAGCTCGACTCATCGACGATC
LOC_Os08g39030
Os.49880.2.S1_x_at--337--1891Chr08:24534125..24534149 (25 bp)
ACGATCACGGTGTCCAGTACTTTGG
LOC_Os08g39030
Os.49880.2.S1_x_at--1047--4191Chr08:24534174..24534198 (25 bp)
CCCGCCATCTAGTTTCTGGAGGATA
LOC_Os08g39030
Os.49880.2.S1_x_at--939--8011NONE
GGAGGATACTATTCCGCCGAGGATA
NONE
Os.49880.2.S1_x_at--117--3131Chr08:24535439..24535463 (25 bp)
AATTTGCTGACCTTGTTGCTGTTGG
LOC_Os08g39030
Os.49880.2.S1_x_at--849--4811Chr08:24535513..24535537 (25 bp)
GCTCTCACACCGAGGGTATGATCGT
LOC_Os08g39030
Os.49880.2.S1_x_at--1113--451Chr08:24535554..24535578 (25 bp)
ATCTCCTGTAATTTACGGTCTGCTA
LOC_Os08g39030
Os.49880.2.S1_x_at--190--1931Chr08:24535568..24535592 (25 bp)
ACGGTCTGCTAACGAATTGATCTAC
LOC_Os08g39030
Target Sequence 
GGATGTTCCACCTGTCGATGAAGATGGCGGCGCCTGGGGATGAACAAGCATCGACGGCGACGGCGGCGGCGGTGGTGGCG
GCGGCGGCGGCGGCCGACGCGGTGGGGGACAGAGAGGGTGTGGGTGTGTGGATCGGCTGAGCGAGCCCAACATGCTCGTT
TAGCCCGGCCCAGTTATCAAGAAGAGGGGCACCAGATGCGCCCAATCCCAAGACAACCATTTTTCCCAAGGAAAAAAAAA
GGAAAGGAAAAAAAAAACAATCGTCTTCAAGCTTCGGGTTCCCGCTCAGCGCGGCAGCGGAACCAAGCCGAGGGAGCTCG
ACTCATCGACGATCACGGTGTCCAGTACTTTGGAAGAATCAGCCTATCCTGCCCGCACCCGCCATCTAGTTTCTGGAGGA
TACTATTCCGCCGAGGATAATTTGCTGACCTTGTTGCTGTTGGAGGAAGTATCTTAGTGTTGATAATGGGCAGGCGCAAA
AAGAAAACACCAGCTCTCACACCGAGGGTATGATCGTCGATCACTTTTTTTCTATCTCCTGTAATTTACGGTCTGCTAAC
GAATTGATCTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49880.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis