Browse Element(s) Details


Os.28195.1.S1_a_at

Description gb:AK064832.1
DB_XREF= gi:32974850
TID=Os.28195.1
CNT=15
FEA=FLmRNA
TIER=FL+Stack
STK=7
UG=Os.28195 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013001O15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013000F17, full insert sequence.
FL= gb:AK064832.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3908011/11peroxisomal targeting signal 1 receptor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g39010OsAffx.17414.1.S1_at11/118+24526948..24527899hypothetical protein
LOC_Os08g39010Os.21836.1.S1_at1/118+24526948..24527899hypothetical protein
LOC_Os08g39020NANA8+24531947..24532315expressed protein
LOC_Os08g39030Os.49880.2.S1_at11/118+24532990..24535594expressed protein
LOC_Os08g39030Os.49880.2.S1_x_at10/118+24532990..24535594expressed protein
LOC_Os08g39040Os.49880.1.S1_at5/118+24536471..24538103expressed protein
LOC_Os08g39050Os.47921.1.A1_at11/118+24540287..24543440pentatricopeptide, putative, expressed
LOC_Os08g39060Os.19370.1.S1_at11/118+24544740..24547524Leucine Rich Repeat family protein, expressed
LOC_Os08g39070Os.25647.1.S1_at11/118+24548335..24551686COP9 signalosome complex subunit 6a, putative, expressed
LOC_Os08g39080Os.28195.1.S1_a_at11/118+24552443..24561690peroxisomal targeting signal 1 receptor, putative, expressed
LOC_Os08g39090Os.5444.1.S1_at11/118+24562844..24566056expressed protein
LOC_Os08g39090Os.5444.1.S2_at11/118+24562844..24566056expressed protein
LOC_Os08g39100Os.47314.1.S1_at11/118+24567299..24571764protein phosphatase 2C family protein, putative, expressed
LOC_Os08g39100Os.47314.1.S2_at11/118+24567299..24571764protein phosphatase 2C family protein, putative, expressed
LOC_Os08g39120Os.6010.1.S1_at11/118+24579715..24582800expressed protein
LOC_Os08g39130Os.54338.1.S1_at11/118+24583470..24585283pentatricopeptide, putative, expressed
LOC_Os08g39140Os.10259.1.S1_at11/118+24586306..24590700Heat shock protein 82, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006625biological_processprotein targeting to peroxisome
GO:0005052molecular_functionperoxisome targeting signal-1 binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.28195.1.S1_a_at--102--7671Chr08:24560329..24560350 (22 bp)
GGGATTAGCTATGCCAACCAGGGAT
LOC_Os08g39080
Os.28195.1.S1_a_at--443--1391Chr08:24560841..24560865 (25 bp)
AGACTCTATTCGATACTATGTACGG
LOC_Os08g39080
Os.28195.1.S1_a_at--1055--6991Chr08:24560860..24560884 (25 bp)
GTACGGGCGGTTGCTATGAATCCAA
LOC_Os08g39080
Os.28195.1.S1_a_at--171--2431Chr08:24560883..24560907 (25 bp)
AAAAGCTGACAATGCCTGGCAGTAC
LOC_Os08g39080
Os.28195.1.S1_a_at--1111--5011Chr08:24560901..24560924 (24 bp)
GCAGTACTTGCGGATTTCTCTTAGT
LOC_Os08g39080
Os.28195.1.S1_a_at--468--6531Chr08:24560913..24561191 (25 bp)
GATTTCTCTTAGTAACGCTTCACGA
LOC_Os08g39080
Os.28195.1.S1_a_at--205--4911Chr08:24561183..24561207 (25 bp)
GCTTCACGAGCTGACATGATCGCTG
LOC_Os08g39080
Os.28195.1.S1_a_at--767--8851Chr08:24561199..24561223 (25 bp)
TGATCGCTGCATGTGATTCACGCAA
LOC_Os08g39080
Os.28195.1.S1_a_at--1010--1831Chr08:24561218..24561242 (25 bp)
ACGCAACCTTGACGTTCTTCAGAAA
LOC_Os08g39080
Os.28195.1.S1_a_at--823--7331Chr08:24561254..24561278 (25 bp)
GTGAGTCCAAACATTCTAGGCATTG
LOC_Os08g39080
Os.28195.1.S1_a_at--561--2351Chr08:24561498..24561522 (25 bp)
AAAGCAGAAGGCAGTTGTCACATGT
LOC_Os08g39080
Target Sequence 
GGGATTAGCTATGCCAACCAGGGATTGTATGAAGACTCTATTCGATACTATGTACGGGCGGTTGCTATGAATCCAAAAGC
TGACAATGCCTGGCAGTACTTGCGGATTTCTCTTAGTAACGCTTCACGAGCTGACATGATCGCTGCATGTGATTCACGCA
ACCTTGACGTTCTTCAGAAAGAGTTTCCCCTGTGAGTCCAAACATTCTAGGCATTGCACTTGCTCCTCAGGCCCGCCCCC
ATGATAAAGGGTACAAGGAAGTAGAGAACTAGCGAAATGGGGGCTGCACATTTTGGAATGATGAAAGTGCAAAATGGCAG
TGGCCGTTGTGTTGTGGTTTTCGGTTCGTGTATACGAATTGTTCATTTTAACAAGGCGCGACATGTATATAAAATTCAAG
ATGGGCACCCATTCTTCCGTAGGTGTGGGAAACGCAAAGCAGAAGGCAGTTGTCACATGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.28195.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis