Browse Element(s) Details


Os.5444.1.S2_at

Description gb:CB672987
DB_XREF= gi:29676712
DB_XREF=OSJNEe07E19.r
CLONE=OSJNEe07E19
TID=Os.5444.1
CNT=31
FEA=FLmRNA
TIER=Stack
STK=8
UG=Os.5444 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-124-H11, full insert sequence
FL= gb:AK059046.1 gb:AK064018.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3909011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g39040Os.49880.1.S1_at5/118+24536471..24538103expressed protein
LOC_Os08g39050Os.47921.1.A1_at11/118+24540287..24543440pentatricopeptide, putative, expressed
LOC_Os08g39060Os.19370.1.S1_at11/118+24544740..24547524Leucine Rich Repeat family protein, expressed
LOC_Os08g39070Os.25647.1.S1_at11/118+24548335..24551686COP9 signalosome complex subunit 6a, putative, expressed
LOC_Os08g39080Os.28195.1.S1_a_at11/118+24552443..24561690peroxisomal targeting signal 1 receptor, putative, expressed
LOC_Os08g39090Os.5444.1.S1_at11/118+24562844..24566056expressed protein
LOC_Os08g39090Os.5444.1.S2_at11/118+24562844..24566056expressed protein
LOC_Os08g39100Os.47314.1.S1_at11/118+24567299..24571764protein phosphatase 2C family protein, putative, expressed
LOC_Os08g39100Os.47314.1.S2_at11/118+24567299..24571764protein phosphatase 2C family protein, putative, expressed
LOC_Os08g39120Os.6010.1.S1_at11/118+24579715..24582800expressed protein
LOC_Os08g39130Os.54338.1.S1_at11/118+24583470..24585283pentatricopeptide, putative, expressed
LOC_Os08g39140Os.10259.1.S1_at11/118+24586306..24590700Heat shock protein 82, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5444.1.S2_at--296--5831Chr08:24563464..24563488 (25 bp)
GACCGGAATATGGACGCGGCAATTC
LOC_Os08g39090
Os.5444.1.S2_at--513--3951Chr08:24563448..24563472 (25 bp)
CGGCAATTCCACTTCTGAACTAGGT
LOC_Os08g39090
Os.5444.1.S2_at--12--5411Chr08:24563327..24563351 (25 bp)
GAAGCTCGACTTCGTCAAATGCAGG
LOC_Os08g39090
Os.5444.1.S2_at--558--3011Chr08:24563310..24563334 (25 bp)
AATGCAGGCTGACGCAGAGGTCCAC
LOC_Os08g39090
Os.5444.1.S2_at--194--3951Chr08:24563230..24563254 (25 bp)
CGGCATCTGTGAACGCAAACCAATT
LOC_Os08g39090
Os.5444.1.S2_at--67--531Chr08:24563135..24563159 (25 bp)
ATCGAAGAGAGCATCCGGCGCCGTG
LOC_Os08g39090
Os.5444.1.S2_at--215--171Chr08:24563107..24563131 (25 bp)
ATTATTCGCAGCGTAATGCCCATGA
LOC_Os08g39090
Os.5444.1.S2_at--450--911Chr08:24563035..24563059 (25 bp)
AGGCGGCCTGACCTCGTTGATGTCA
LOC_Os08g39090
Os.5444.1.S2_at--514--211Chr08:24563001..24563025 (25 bp)
ATTTGCTTTAGCTTCTTTTGCCTTT
LOC_Os08g39090
Os.5444.1.S2_at--11--10691Chr08:24562984..24563008 (25 bp)
TTGCCTTTCTGGTGTATTGTTCCTT
LOC_Os08g39090
Os.5444.1.S2_at--815--6631Chr08:24562934..24562958 (25 bp)
GTTGTACAACGCATTGTCCAGATGT
LOC_Os08g39090
Target Sequence 
GACCGGAATATGGACGCGGCAATTCCACTTCTGAACTAGGTTCAGAAGGCCAACGAAGGCAGGAAAGCCAGCAGGGCAGG
AACGGCCNTACATTCAACCGTCGACGGGGTGTCCAGCACATGTCAGAGGAAGAAAGGGAAGCTCGACTTCGTCAAATGCA
GGCTGACGCAGAGGTCCACGAAGAACAAAGATGGAGCAGGCTCAAGAAAGCTGCAGACGACGATGCCAAGGAGGCGGCAT
CTGTGAACGCAAACCAATTCAGAGGGAAGAACTTCTTGGAAGAAGAAAAGAAGAGCATATTTGGAACCGAGAAGGGCGGA
AGCGCCACGATCGAAGAGAGCATCCGGCGCCGTGCGTATTATTCGCAGCGTAATGCCCATGAGAGCAATGCATTCAGGCG
GTGAAATCCCTGAAGCAGAGCAGCAGCTCAGGCGGCCTGACCTCGTTGATGTCAGTGTTCTGCATTTGCTTTAGCTTCTT
TTGCCTTTCTGGTGTATTGTTCCTTGTTTAGTATGGAAGAATTTTTGAATGTTGTACAACGCATTGTCCAGATGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5444.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis