Browse Element(s) Details


Os.47314.1.S1_at

Description gb:AK100141.1
DB_XREF= gi:32985350
TID=Os.47314.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.47314 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-174-H02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023011B13, full insert sequence.
FL= gb:AK073076.1 gb:AK100141.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3910011/11protein phosphatase 2C family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g39050Os.47921.1.A1_at11/118+24540287..24543440pentatricopeptide, putative, expressed
LOC_Os08g39060Os.19370.1.S1_at11/118+24544740..24547524Leucine Rich Repeat family protein, expressed
LOC_Os08g39070Os.25647.1.S1_at11/118+24548335..24551686COP9 signalosome complex subunit 6a, putative, expressed
LOC_Os08g39080Os.28195.1.S1_a_at11/118+24552443..24561690peroxisomal targeting signal 1 receptor, putative, expressed
LOC_Os08g39090Os.5444.1.S1_at11/118+24562844..24566056expressed protein
LOC_Os08g39090Os.5444.1.S2_at11/118+24562844..24566056expressed protein
LOC_Os08g39100Os.47314.1.S1_at11/118+24567299..24571764protein phosphatase 2C family protein, putative, expressed
LOC_Os08g39100Os.47314.1.S2_at11/118+24567299..24571764protein phosphatase 2C family protein, putative, expressed
LOC_Os08g39120Os.6010.1.S1_at11/118+24579715..24582800expressed protein
LOC_Os08g39130Os.54338.1.S1_at11/118+24583470..24585283pentatricopeptide, putative, expressed
LOC_Os08g39140Os.10259.1.S1_at11/118+24586306..24590700Heat shock protein 82, putative, expressed
LOC_Os08g39150Os.26955.1.S1_at7/118+24594105..24598380expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0005634cellular_componentnucleus
GO:0015071molecular_functionprotein phosphatase type 2C activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47314.1.S1_at--101--4791Chr08:24568951..24568975 (25 bp)
GCTGCCAATAATCTAACTGCTGTAC
LOC_Os08g39100
Os.47314.1.S1_at--373--6071Chr08:24568657..24568681 (25 bp)
GAGTTTTTGCTCTTCAGGATGAACC
LOC_Os08g39100
Os.47314.1.S1_at--909--8571Chr08:24568616..24568640 (25 bp)
TGGTTGCCAAATAATGACTCTCCTG
LOC_Os08g39100
Os.47314.1.S1_at--197--5711Chr08:24568601..24568625 (25 bp)
GACTCTCCTGGATTGGCAATGGCAA
LOC_Os08g39100
Os.47314.1.S1_at--710--5911Chr08:24568576..24568600 (25 bp)
GAGCTTTTGGAGACTTCTGCCTTAA
LOC_Os08g39100
Os.47314.1.S1_at--434--6491Chr08:24568524..24568548 (25 bp)
GATATCCTATCGTCGTCTTACTGAA
LOC_Os08g39100
Os.47314.1.S1_at--895--6651Chr08:24568222..24568246 (25 bp)
GTTGACATAGTAGCCGCAGCTCCAT
LOC_Os08g39100
Os.47314.1.S1_at--176--9591Chr08:24568175..24568199 (25 bp)
TCTTGTCGACTGTGCTGTCAGATCA
LOC_Os08g39100
Os.47314.1.S1_at--883--5331Chr08:24568142..24568166 (25 bp)
GAAGTTCCCAACATCCAAGAGCGAT
LOC_Os08g39100
Os.47314.1.S1_at--590--6631Chr08:24568108..24568132 (25 bp)
GTTGTGTGCCTATTCTTAGACCATG
LOC_Os08g39100
Os.47314.1.S1_at--418--7991Chr08:24568031..24568055 (25 bp)
GGATGTTGCAATCCCAGACACCGTT
LOC_Os08g39100
Target Sequence 
GCTGCCAATAATCTAACTGCTGTACAACTCACAGTTGATTTGAAGCCTAACCTTCCAAGGGAAGCTGCGAGGATCCAGCA
GTGTAGGGGAAGAGTTTTTGCTCTTCAGGATGAACCAGAAGTTGCCAGAGTATGGTTGCCAAATAATGACTCTCCTGGAT
TGGCAATGGCAAGAGCTTTTGGAGACTTCTGCCTTAAAGATTATGGTTTAATATCTGTTCCACAGATATCCTATCGTCGT
CTTACTGAAAAGGATGAGTTCATAATACTGGCCACTGATGGGGTTTGGGACGTCCTCTCAAACAAGGAGGCTGTTGACAT
AGTAGCCGCAGCTCCATCTCGTGCAACGGCTGCCAGGGCTCTTGTCGACTGTGCTGTCAGATCATGGAGATTGAAGTTCC
CAACATCCAAGAGCGATGACTGCGCTGTTGTGTGCCTATTCTTAGACCATGCAAAGTCACCTGACTTGATTCAAGAGAAC
GAGAGCGAGGAAGAAACTACAGAGGATGTTGCAATCCCAGACACCGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47314.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis