Browse Element(s) Details


Os.5444.1.S1_at

Description gb:AK059046.1
DB_XREF= gi:32969064
TID=Os.5444.1
CNT=31
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.5444 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-124-H11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-021-D09, full insert sequence.
FL= gb:AK059046.1 gb:AK064018.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3909011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g39040Os.49880.1.S1_at5/118+24536471..24538103expressed protein
LOC_Os08g39050Os.47921.1.A1_at11/118+24540287..24543440pentatricopeptide, putative, expressed
LOC_Os08g39060Os.19370.1.S1_at11/118+24544740..24547524Leucine Rich Repeat family protein, expressed
LOC_Os08g39070Os.25647.1.S1_at11/118+24548335..24551686COP9 signalosome complex subunit 6a, putative, expressed
LOC_Os08g39080Os.28195.1.S1_a_at11/118+24552443..24561690peroxisomal targeting signal 1 receptor, putative, expressed
LOC_Os08g39090Os.5444.1.S1_at11/118+24562844..24566056expressed protein
LOC_Os08g39090Os.5444.1.S2_at11/118+24562844..24566056expressed protein
LOC_Os08g39100Os.47314.1.S1_at11/118+24567299..24571764protein phosphatase 2C family protein, putative, expressed
LOC_Os08g39100Os.47314.1.S2_at11/118+24567299..24571764protein phosphatase 2C family protein, putative, expressed
LOC_Os08g39120Os.6010.1.S1_at11/118+24579715..24582800expressed protein
LOC_Os08g39130Os.54338.1.S1_at11/118+24583470..24585283pentatricopeptide, putative, expressed
LOC_Os08g39140Os.10259.1.S1_at11/118+24586306..24590700Heat shock protein 82, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5444.1.S1_at--747--8091Chr08:24565824..24565848 (25 bp)
GGAGCCTTCGGAACATCGAGCGCGT
LOC_Os08g39090
Os.5444.1.S1_at--53--2791Chr08:24565230..24565254 (25 bp)
AAGAGAGATTGGACTTCCTCTACGA
LOC_Os08g39090
Os.5444.1.S1_at--706--9251Chr08:24565215..24565239 (25 bp)
TCCTCTACGAGTCAGGGTTGGCTGT
LOC_Os08g39090
Os.5444.1.S1_at--637--6131Chr08:24565174..24565198 (25 bp)
GAGGGATTCCAAGCGCTGCAACCAT
LOC_Os08g39090
Os.5444.1.S1_at--508--9571Chr08:24565123..24565147 (25 bp)
TCTTCTTCTGCCCAAGCGAGTGCCG
LOC_Os08g39090
Os.5444.1.S1_at--610--6111Chr08:24565111..24565130 (20 bp)
GAGTGCCGGCTCTTCCAAGGCAGCT
LOC_Os08g39090
Os.5444.1.S1_at--473--3211Chr08:24564415..24564437 (23 bp)
CAAGGCAGCTGCTCCAGGTGCATTA
LOC_Os08g39090
Os.5444.1.S1_at--50--6171Chr08:24564387..24564411 (25 bp)
GAGGATAAGCCCCAATCTGCAAATG
LOC_Os08g39090
Os.5444.1.S1_at--522--8051Chr08:24564356..24564380 (25 bp)
GGAGAAAACTCCACACTGATCCTCT
LOC_Os08g39090
Os.5444.1.S1_at--607--6371Chr08:24564339..24564363 (25 bp)
GATCCTCTTCTACTAATAAGGCAGC
LOC_Os08g39090
Os.5444.1.S1_at--423--3391Chr08:24564318..24564342 (25 bp)
CAGCGGGAGCAGGATGCCATTGCAA
LOC_Os08g39090
Target Sequence 
GGAGCCTTCGGAACATCGAGCGCGTGTGGGTGGCCGAGGAGAAGGAGAAGGAGGAGCAGCGGAAGATCCAGGAGCTGAAG
AAGCAGCAGGACGAGGAGCGGGAGAAGGCCGCCTTCCGCAAGCTCCAGGAGGACGCCGGCCTCAAGCCGAGGCAAGAGAG
ATTGGACTTCCTCTACGAGTCAGGGTTGGCTGTTGGCAAGGGGAGCTCCGAGGGATTCCAAGCGCTGCAACCATCTGCCC
CAGCAGCTGCTGCCGCCGCCTCTTCTTCTGCCCAAGCGAGTGCCGGCTCTTCCAAGGCAGCTGCTCCAGGTGCATTATTT
GAGGATAAGCCCCAATCTGCAAATGATGCATGGAGAAAACTCCACACTGATCCTCTTCTACTAATAAGGCAGCGGGAGCA
GGATGCCATTGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5444.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis