Browse Element(s) Details


Os.6010.1.S1_at

Description gb:AK068508.1
DB_XREF= gi:32978526
TID=Os.6010.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.6010 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013152N15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013152N15, full insert sequence.
FL= gb:AK068508.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3912011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g39080Os.28195.1.S1_a_at11/118+24552443..24561690peroxisomal targeting signal 1 receptor, putative, expressed
LOC_Os08g39090Os.5444.1.S1_at11/118+24562844..24566056expressed protein
LOC_Os08g39090Os.5444.1.S2_at11/118+24562844..24566056expressed protein
LOC_Os08g39100Os.47314.1.S1_at11/118+24567299..24571764protein phosphatase 2C family protein, putative, expressed
LOC_Os08g39100Os.47314.1.S2_at11/118+24567299..24571764protein phosphatase 2C family protein, putative, expressed
LOC_Os08g39120Os.6010.1.S1_at11/118+24579715..24582800expressed protein
LOC_Os08g39130Os.54338.1.S1_at11/118+24583470..24585283pentatricopeptide, putative, expressed
LOC_Os08g39140Os.10259.1.S1_at11/118+24586306..24590700Heat shock protein 82, putative, expressed
LOC_Os08g39150Os.26955.1.S1_at7/118+24594105..24598380expressed protein
LOC_Os08g39160Os.49426.1.S1_at11/118+24598749..24601260Phosphoribosylglycinamide formyltransferase, chloroplast precursor, putative, expressed
LOC_Os08g39170OsAffx.6080.1.S1_at11/118+24602067..24605518Protein kinase domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6010.1.S1_at--282--8811Chr08:24582209..24582233 (25 bp)
TGTTGACCCTTGGTACAGACACCGC
LOC_Os08g39120
Os.6010.1.S1_at--260--8431Chr08:24582234..24582258 (25 bp)
TGGCCCTTACAAACACCTATTGGAG
LOC_Os08g39120
Os.6010.1.S1_at--962--9191Chr08:24582306..24582330 (25 bp)
TGCCAGCCAGTCAGTTACAGAAGTT
LOC_Os08g39120
Os.6010.1.S1_at--795--5311Chr08:24582334..24582358 (25 bp)
GAAGGTCATAGGTACCCTTTCACAT
LOC_Os08g39120
Os.6010.1.S1_at--167--2791Chr08:24582379..24582403 (25 bp)
AAGAGGCTTGACCTTGTTGATCCTG
LOC_Os08g39120
Os.6010.1.S1_at--782--2031Chr08:24582415..24582439 (25 bp)
ACTATGGTGGATTCAGAGCCTCTGA
LOC_Os08g39120
Os.6010.1.S1_at--1129--5871Chr08:24582438..24582462 (25 bp)
GAGCGCACTGGCTAGCGTGGCAAAT
LOC_Os08g39120
Os.6010.1.S1_at--404--10071Chr08:24582662..24582686 (25 bp)
TAGTGCAAAGCATTCAGATTCTCTG
LOC_Os08g39120
Os.6010.1.S1_at--974--1251Chr08:24582677..24582701 (25 bp)
AGATTCTCTGCTTTCTATCATGCAC
LOC_Os08g39120
Os.6010.1.S1_at--592--9011Chr08:24582711..24582735 (25 bp)
TGAATACCTCGTCTTCCAGATGAGC
LOC_Os08g39120
Os.6010.1.S1_at--260--1311Chr08:24582728..24582752 (25 bp)
AGATGAGCCGCAGTTTACTTAGATA
LOC_Os08g39120
Target Sequence 
TGTTGACCCTTGGTACAGACACCGCTGGCCCTTACAAACACCTATTGGAGCAGTCTGAAACAATGCGTTACCCNAGANAG
GATTGAAGCTGAAGACTCCTGCCAGCCAGTCAGTTACAGAAGTTGAAGAAGGTCATAGGTACCCTTTCACATACAAAAGG
AGGAAGCTGCAGAAGAGGCTTGACCTTGTTGATCCTGTCAAGAAATCAACTATGGTGGATTCAGAGCCTCTGAGCGCACT
GGCTAGCGTGGCAAATGTAAAAATCAAAGGCAATCAAGCTTTGAAGATTGGCAGCTGAGAACAAGGATAGCTGAACATAG
AAATTGGAGCATGGCTTATGAACATCTAGCTAACATAGTAAATAAAATGTTCTCTTTTGTTTTGGGTTCTGGTTCGAAGT
CAGGTGGAGTGCATTCATTGTTAAATTTGATAGTAGACAAAATGACATGAATCTCTAGTGCAAAGCATTCAGATTCTCTG
CTTTCTATCATGCACATCCCTCCCTGAATACCTCGTCTTCCAGATGAGCCGCAGTTTACTTAGATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6010.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis