Browse Element(s) Details


Os.26955.1.S1_at

Description gb:AK101328.1
DB_XREF= gi:32986537
TID=Os.26955.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.26955 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033034G12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033034G12, full insert sequence.
FL= gb:AK101328.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g391507/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g39100Os.47314.1.S1_at11/118+24567299..24571764protein phosphatase 2C family protein, putative, expressed
LOC_Os08g39100Os.47314.1.S2_at11/118+24567299..24571764protein phosphatase 2C family protein, putative, expressed
LOC_Os08g39120Os.6010.1.S1_at11/118+24579715..24582800expressed protein
LOC_Os08g39130Os.54338.1.S1_at11/118+24583470..24585283pentatricopeptide, putative, expressed
LOC_Os08g39140Os.10259.1.S1_at11/118+24586306..24590700Heat shock protein 82, putative, expressed
LOC_Os08g39150Os.26955.1.S1_at7/118+24594105..24598380expressed protein
LOC_Os08g39160Os.49426.1.S1_at11/118+24598749..24601260Phosphoribosylglycinamide formyltransferase, chloroplast precursor, putative, expressed
LOC_Os08g39170OsAffx.6080.1.S1_at11/118+24602067..24605518Protein kinase domain containing protein
LOC_Os08g39180Os.27559.1.S1_at1/118+24608961..24625646retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26955.1.S1_at--199--8432Chr08:24597648..24597672 (25 bp)
GGCCATTGAAATGCTTCGCTCACAA
LOC_Os08g39150
Os.26955.1.S1_at--474--3651Chr08:24597692..24597716 (25 bp)
CTTCTGCTCTTCAAACACTCTTTAA
LOC_Os08g39150
Os.26955.1.S1_at--13--7072Chr08:24597865..24597886 (22 bp)
GTAAGTCCAATCCACAGTTCCAAAG
LOC_Os08g39150
Os.26955.1.S1_at--953--6131Chr08:24598015..24598039 (25 bp)
GAGGTCCTTGAACTGATTGGTTTCT
LOC_Os08g39150
Os.26955.1.S1_at--314--951Chr08:24598096..24598120 (25 bp)
AGGAACGATCCTGGCTTGCTGTGGC
LOC_Os08g39150
Os.26955.1.S1_at--736--8491Chr05:10889748..10889772 (25 bp)
TGGCTTGCAAAGTCCTCTCTTGAAG
NONE
Os.26955.1.S1_at--882--9451Chr08:24598132..24598155 (24 bp)
TCTCTTGAAGTTTCCATGGCCTGAC
LOC_Os08g39150
Os.26955.1.S1_at--564--871NONE
ATGGCCTGACAATCGTTTCATCGGT
NONE
Os.26955.1.S1_at--766--9251Chr05:2556005..2556034 (24 bp)
TCCTACTGCTTCTGTATACCTGTAA
NONE
Os.26955.1.S1_at--364--6931Chr08:24598257..24598281 (25 bp)
GTATGGTCTTCCTACACGATGATTG
LOC_Os08g39150
Os.26955.1.S1_at--818--2871NONE
AAGTGGTCTATACTGTCTGTCAACA
NONE
Target Sequence 
GGCCATTGAAATGCTTCGCTCACAAGCAACACCTGCAGAGGCAACTTCTGCTCTTCAAACACTCTTTAAGATCATCAAGA
ATGTGATAGAGCACCCNCATGATATCAAGTACAGGAGACTGCGTAAGTCCAATCCACAGTTCCAAAGGAGTGTGGCGAAC
TACAAAGCTGCAATGGAGGTCCTTGAACTGATTGGTTTCTGTGAGGATGTCGTCTCGGATGAGATTGGTCGTGCAGAGAC
TTACTTGGTACTGAAAAGGAACGATCCTGGCTTGCTGTGGCTTGCAAAGTCCTCTCTTGAAGTTTCCATGGCCTGACAAT
CGTTTCATCGGTCAATCTCCTACTGCTTCTGTATACCTGTAAATCATTTTCATTACTGTTGTGGGGATGCTCATATGCTG
CTCTTAGGCAAATGATGTAGTATGGTCTTCCTACACGATGATTGTTTGTACATGGAAACACCAAAGTGGTCTATACTGTC
TGTCAACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26955.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis