Browse Element(s) Details


Os.27559.1.S1_at

Description gb:AK067363.1
DB_XREF= gi:32977381
TID=Os.27559.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27559 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013100G02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013100G02, full insert sequence.
FL= gb:AK067363.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3924011/11wall-associated kinase-like 1, putative, expressed
LOC_Os08g391801/11retrotransposon protein, putative, Ty1-copia subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g39180Os.27559.1.S1_at1/118+24608961..24625646retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g39190Os.55530.1.S1_at11/118+24629487..24630070expressed protein
LOC_Os08g39200OsAffx.29595.1.S1_at11/118+24630813..24631235hypothetical protein
LOC_Os08g39210OsAffx.29596.1.S1_s_at11/118+24634500..24638047wall-associated kinase-like 1, putative, expressed
LOC_Os08g39220OsAffx.29597.1.S1_at11/118+24640118..24642902wall-associated kinase-like 1, putative
LOC_Os08g39230OsAffx.6081.1.S1_at11/118+24643979..24645776hypothetical protein
LOC_Os08g39240Os.27559.1.S1_at11/118+24647467..24653247wall-associated kinase-like 1, putative, expressed
LOC_Os08g39250Os.32331.1.S1_at11/118+24667734..24674195expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007166biological_processcell surface receptor linked signal transduction
GO:0009620biological_processresponse to fungi
GO:0009751biological_processresponse to salicylic acid stimulus
GO:0009826biological_processunidimensional cell growth
GO:0048527biological_processlateral root development
GO:0005618cellular_componentcell wall
GO:0005886cellular_componentplasma membrane
GO:0009505cellular_componentcell wall (sensu Magnoliophyta)
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27559.1.S1_at--360--2111Chr08:24652654..24652678 (25 bp)
ACATGTTATCTCACTTCTCTCAAAA
LOC_Os08g39240
Os.27559.1.S1_at--14--5971Chr08:24652728..24652752 (25 bp)
GAGAAGTCCTAGAAGTGGCAACACT
LOC_Os08g39240
Os.27559.1.S1_at--672--8231Chr08:24652744..24652768 (25 bp)
GGCAACACTAGCCACAACATGTACT
LOC_Os08g39240
Os.27559.1.S1_at--234--5511Chr08:24652837..24652861 (25 bp)
GAAAAGCTCCTTCTGTAACAAGAAC
LOC_Os08g39240
Os.27559.1.S1_at--996--10371Chr08:24652896..24652920 (25 bp)
TTTTAGCTCTTTACATGTCGATCGA
LOC_Os08g39240
Os.27559.1.S1_at--738--7611Chr08:24652971..24652995 (25 bp)
GGGAAATACCATTGTCGTCAAGGTT
LOC_Os08g39240
Os.27559.1.S1_at--513--10591Chr08:24652996..24653020 (25 bp)
TTCTCGATAATCATTCTCTGTCCTG
LOC_Os08g39240
Os.27559.1.S1_at--299--5451Chr08:24653026..24653050 (25 bp)
GAACGCCTTGCAAGAAAGCCGGAAA
LOC_Os08g39240
Os.27559.1.S1_at--679--10051Chr08:24653053..24653077 (25 bp)
TAGTTACATCGATCCTGTTCTGTTC
LOC_Os08g39240
Os.27559.1.S1_at--20--6592Chr08:24653190..24653214 (25 bp)
GATTCGATCAGTTTGCTCTAATGGA
LOC_Os08g39240
Os.27559.1.S1_at--186--5051Chr08:24653223..24653247 (25 bp)
GCAGAGTGCCGTTTGTGTTTTCATT
LOC_Os08g39240
Target Sequence 
ACATGTTATCTCACTTCTCTCAAAAGGTAATCTTTATAATATAATAGATTCTCAAGTTAAAGAAGAGGAAGATGGAGAAG
TCCTAGAAGTGGCAACACTAGCCACAACATGTACTAAGTTTAAAGGAGAAGAGCGGCCTACGATGAGAGAAGTAGAGATG
GCACTGGAAAGCATAGTTTCAAAGAAAAGCTCCTTCTGTAACAAGAACAGTCAATCAAGTAGTAGATCCGATGAAAATCG
AATTTTAGCTCTTTACATGTCGATCGAAGGAGTTACCAAGGACAAAACAATTACAATTACAGAAAGCAGCACGGAAGGGG
AAATACCATTGTCGTCAAGGTTTTCTCGATAATCATTCTCTGTCCTGAACGAGAACGCCTTGCAAGAAAGCCGGAAACTT
AGTTACATCGATCCTGTTCTGTTCTAAATGATTGCTAAAGTAATTTTGCTGTAAAACAATAATAATGCAACAGAAAAATT
GTGTCGTATCAGAANNNNNNAGTACTTGTGGTTTAGTTCATGTTGATTAAGCATCTGATTCGATCAGTTTGCTCTAATGG
ACTGAAATTGCAGAGTGCCGTTTGTGTTTTCATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27559.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis