Browse Element(s) Details


OsAffx.6081.1.S1_at

Description tigr:9636.m03962
TID=OsAffx.6081.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3923011/11hypothetical protein
LOC_Os11g297301/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g39180Os.27559.1.S1_at1/118+24608961..24625646retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g39190Os.55530.1.S1_at11/118+24629487..24630070expressed protein
LOC_Os08g39200OsAffx.29595.1.S1_at11/118+24630813..24631235hypothetical protein
LOC_Os08g39210OsAffx.29596.1.S1_s_at11/118+24634500..24638047wall-associated kinase-like 1, putative, expressed
LOC_Os08g39220OsAffx.29597.1.S1_at11/118+24640118..24642902wall-associated kinase-like 1, putative
LOC_Os08g39230OsAffx.6081.1.S1_at11/118+24643979..24645776hypothetical protein
LOC_Os08g39240Os.27559.1.S1_at11/118+24647467..24653247wall-associated kinase-like 1, putative, expressed
LOC_Os08g39250Os.32331.1.S1_at11/118+24667734..24674195expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6081.1.S1_at--187--2371Chr08:24645664..24645688 (25 bp)
AAACCATGCCTTGGTTCTCTAGGGC
LOC_Os08g39230
OsAffx.6081.1.S1_at--807--431Chr08:24645586..24645610 (25 bp)
ATCTATTTCCTAACAATGCCTCGTC
LOC_Os08g39230
OsAffx.6081.1.S1_at--38--2251Chr08:24645556..24645580 (25 bp)
AAATTGTTATCTTGTGGCAGCGCCC
LOC_Os08g39230
OsAffx.6081.1.S1_at--566--1551Chr08:24645530..24645554 (25 bp)
AGCTACCTCAAGTTGGTCACTTTGG
LOC_Os08g39230
OsAffx.6081.1.S1_at--1069--9771Chr08:24645496..24645520 (25 bp)
TAAGGGAGAGCGGATCCATCCTTCT
LOC_Os08g39230
OsAffx.6081.1.S1_at--527--2451Chr08:24645055..24645079 (25 bp)
AACAGAAAGCTACCGGGCCCTTATG
LOC_Os08g39230
OsAffx.6081.1.S1_at--1127--8311Chr08:24644977..24645001 (25 bp)
GGCTCATTGGCCATTGATTCAAGTG
LOC_Os08g39230
OsAffx.6081.1.S1_at--425--6551Chr08:24644962..24644986 (25 bp)
GATTCAAGTGTCTAGGGCCAGGGCA
LOC_Os08g39230
OsAffx.6081.1.S1_at--244--2311Chr08:24644933..24644957 (25 bp)
AAAGGCACTTGTCCTACCAATGCTG
LOC_Os08g39230
OsAffx.6081.1.S1_at--1066--8291Chr08:24644091..24644115 (25 bp)
GGCTTAGACTGTGGGCTCAACTACA
LOC_Os08g39230
OsAffx.6081.1.S1_at--1072--7174Chr05:14786848..14786872 (25 bp)
GTCTGTTGCATGTCGTAACCTTGAG
NONE
Target Sequence 
AAACCATGCCTTGGTTCTCTAGGGCGGTCGACGGCAACGCTTTCGGTGTCACATCCTCCCTAGAGGAATCATTTGAAAAT
CTATTTCCTAACAATGCCTCGTCCAGACAAATTGTTATCTTGTGGCAGCGCCCTAGCTACCTCAAGTTGGTCACTTTGGA
GGGTCTTGTAAGGGAGAGCGGATCCATCCTTCTCTCTTGCCTTCTCTGCCCTAAATGCAAAGGCGTGGATGGAATTAGTG
TGTTGGAAGATGAAACAGAAAGCTACCGGGCCCTTATGATACTCCACTGTCCTACCATATGCCTTTACCCTGGCTCACCT
CATCCCCCTCTGGCTCATTGGCCATTGATTCAAGTGTCTAGGGCCAGGGCATCTCAAAGGCACTTGTCCTACCAATGCTG
GTTTGGCAGCCACATCGCGCGATACCCCGCAAAAAAAGTGATTTTCAAGGCAACATATTGGCTTAGACTGTGGGCTCAAC
TACAAAAGTGTGAGGAAGATGGAGAATTCATGTCTGTTGCATGTCGTAACCTTGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6081.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis