Browse Element(s) Details


OsAffx.29595.1.S1_at

Description tigr:9636.m03959
TID=OsAffx.29595.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3920011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g39180Os.27559.1.S1_at1/118+24608961..24625646retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g39190Os.55530.1.S1_at11/118+24629487..24630070expressed protein
LOC_Os08g39200OsAffx.29595.1.S1_at11/118+24630813..24631235hypothetical protein
LOC_Os08g39210OsAffx.29596.1.S1_s_at11/118+24634500..24638047wall-associated kinase-like 1, putative, expressed
LOC_Os08g39220OsAffx.29597.1.S1_at11/118+24640118..24642902wall-associated kinase-like 1, putative
LOC_Os08g39230OsAffx.6081.1.S1_at11/118+24643979..24645776hypothetical protein
LOC_Os08g39240Os.27559.1.S1_at11/118+24647467..24653247wall-associated kinase-like 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29595.1.S1_at--165--9451Chr08:24631159..24631183 (25 bp)
TCGGCGACGCGCACTGGGACCGCTT
LOC_Os08g39200
OsAffx.29595.1.S1_at--885--9631Chr08:24631114..24631138 (25 bp)
TCAGGCATGACGTCACCGAGGCGCA
LOC_Os08g39200
OsAffx.29595.1.S1_at--551--7111Chr08:24631041..24631065 (25 bp)
GTCAGGTCCCAATGCTGGGCCGAAG
LOC_Os08g39200
OsAffx.29595.1.S1_at--800--3011Chr08:24631031..24631055 (25 bp)
AATGCTGGGCCGAAGGAGCTCTGCC
LOC_Os08g39200
OsAffx.29595.1.S1_at--791--1971Chr08:24630992..24631016 (25 bp)
ACTGCGGCTGCCACCAAGCACTTGT
LOC_Os08g39200
OsAffx.29595.1.S1_at--44--1571Chr08:24630956..24630980 (25 bp)
AGCTTTGGCTCCATCGCCGAGGAAA
LOC_Os08g39200
OsAffx.29595.1.S1_at--954--8271Chr08:24630915..24630939 (25 bp)
GGCATCCATTGCTGTGTTCATGACA
LOC_Os08g39200
OsAffx.29595.1.S1_at--1011--3512Chr08:24630888..24630912 (25 bp)
CATGTTCATGTTGTGGCCATGGCAT
LOC_Os08g39200
OsAffx.29595.1.S1_at--72--8451Chr08:24630874..24630898 (25 bp)
GGCCATGGCATCCTCATGCAAGAAG
LOC_Os08g39200
OsAffx.29595.1.S1_at--385--2771Chr08:24630852..24630876 (25 bp)
AAGACGCCAGCATTTGTGGCCTTTG
LOC_Os08g39200
OsAffx.29595.1.S1_at--191--1551Chr08:24630844..24630868 (25 bp)
AGCATTTGTGGCCTTTGCATAGAAG
LOC_Os08g39200
Target Sequence 
TCGGCGACGCGCACTGGGACCGCTTCCAGGAGGCCGTCCTCGAGCTCAGGCATGACGTCACCGAGGCGCAGGCGGTGCTG
CGGAGGGGCAACGCCGCAAGGCGAGGCTCGCGGCCGCCGTCAGGTCCCAATGCTGGGCCGAAGGAGCTCTGCCGCCTCGC
CTCCGCCACTGCGGCTGCCACCAAGCACTTGTCGCCGCGCCTCAGCTTTGGCTCCATCGCCGAGGAAATCGAGATGGCCG
CCGCGGCATCCATTGCTGTGTTCATGACAACCATGTTCATGTTGTGGCCATGGCATCCTCATGCAAGAAGACGCCAGCAT
TTGTGGCCTTTGCATAGAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29595.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis