Browse Element(s) Details


Os.19370.1.S1_at

Description gb:AK099866.1
DB_XREF= gi:32985075
TID=Os.19370.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.19370 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013111E08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013111E08, full insert sequence.
FL= gb:AK099866.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3906011/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g39000OsAffx.6079.1.S1_at11/118+24524268..24525428expressed protein
LOC_Os08g39010OsAffx.17414.1.S1_at11/118+24526948..24527899hypothetical protein
LOC_Os08g39010Os.21836.1.S1_at1/118+24526948..24527899hypothetical protein
LOC_Os08g39020NANA8+24531947..24532315expressed protein
LOC_Os08g39030Os.49880.2.S1_at11/118+24532990..24535594expressed protein
LOC_Os08g39030Os.49880.2.S1_x_at10/118+24532990..24535594expressed protein
LOC_Os08g39040Os.49880.1.S1_at5/118+24536471..24538103expressed protein
LOC_Os08g39050Os.47921.1.A1_at11/118+24540287..24543440pentatricopeptide, putative, expressed
LOC_Os08g39060Os.19370.1.S1_at11/118+24544740..24547524Leucine Rich Repeat family protein, expressed
LOC_Os08g39070Os.25647.1.S1_at11/118+24548335..24551686COP9 signalosome complex subunit 6a, putative, expressed
LOC_Os08g39080Os.28195.1.S1_a_at11/118+24552443..24561690peroxisomal targeting signal 1 receptor, putative, expressed
LOC_Os08g39090Os.5444.1.S1_at11/118+24562844..24566056expressed protein
LOC_Os08g39090Os.5444.1.S2_at11/118+24562844..24566056expressed protein
LOC_Os08g39100Os.47314.1.S1_at11/118+24567299..24571764protein phosphatase 2C family protein, putative, expressed
LOC_Os08g39100Os.47314.1.S2_at11/118+24567299..24571764protein phosphatase 2C family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0009723biological_processresponse to ethylene stimulus
GO:0010105biological_processnegative regulation of ethylene mediated signaling pathway
GO:0005634cellular_componentnucleus
GO:0004842molecular_functionubiquitin-protein ligase activity
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.19370.1.S1_at--182--5551Chr08:24546982..24547006 (25 bp)
GAAACTCTAGGTTCTATGCGTCACA
LOC_Os08g39060
Os.19370.1.S1_at--436--5271Chr08:24547028..24547052 (25 bp)
GAATGCTGGATCTCTCCTATTGTTC
LOC_Os08g39060
Os.19370.1.S1_at--1107--3111Chr08:24547066..24547090 (25 bp)
AATTTCCTGGGACTATTTGAGCCGC
LOC_Os08g39060
Os.19370.1.S1_at--20--2511Chr08:24547129..24547153 (25 bp)
AACATGTTGGAACGCCGTGGCTGCA
LOC_Os08g39060
Os.19370.1.S1_at--700--131Chr08:24547191..24547215 (25 bp)
ATTAACAGTCTGTGGCAACGCCTGC
LOC_Os08g39060
Os.19370.1.S1_at--488--31Chr08:24547271..24547295 (25 bp)
ATTGTCGTTCGGGTTTGATTCTGTA
LOC_Os08g39060
Os.19370.1.S1_at--157--8731Chr08:24547292..24547316 (25 bp)
TGTAATTCCTTCATCCGTTCTGTAA
LOC_Os08g39060
Os.19370.1.S1_at--163--2571Chr08:24547320..24547344 (25 bp)
AACTGTGGAACATCTCTTGCGTTTG
LOC_Os08g39060
Os.19370.1.S1_at--526--10091Chr08:24547367..24547391 (25 bp)
TAGGATTTGTTGGTTTGCTCTGCAC
LOC_Os08g39060
Os.19370.1.S1_at--513--6611Chr08:24547423..24547447 (25 bp)
GATTGGTTGGTTTTCTTTGCACTTG
LOC_Os08g39060
Os.19370.1.S1_at--744--9431Chr08:24547482..24547506 (25 bp)
TCGGCTGCTTGTGTCCTGTAATAAA
LOC_Os08g39060
Target Sequence 
GAAACTCTAGGTTCTATGCGTCACAATTTGGGTAAAAGTTCCCTAAGAATGCTGGATCTCTCCTATTGTTCTAGGCTGTC
ACGTAATTTCCTGGGACTATTTGAGCCGCCATTTTTTAGGGGCCTGAGGTGGCTTGGTGTTGGGAAGAACATGTTGGAAC
GCCGTGGCTGCAGTCCAACTGTCGCGGAGCTCCTGGAGCGAAAGCCTGGATTAACAGTCTGTGGCAACGCCTGCGAGATG
GGCTGCAGGAATCAGTGCCATCCTGACATTCGAAGGCAATAAACCGAAGATTGTCGTTCGGGTTTGATTCTGTAATTCCT
TCATCCGTTCTGTAACATAACTGTGGAACATCTCTTGCGTTTGTAGGTTAGAAGGGGCTGTTCTTTAGGATTTGTTGGTT
TGCTCTGCACTTGTAGATTGTAAACAAGGAACAGCTCTTAGGATTGGTTGGTTTTCTTTGCACTTGTAGATTGTAAACAA
GGAGCTGTTCTTAGGATTGGTCGGCTGCTTGTGTCCTGTAATAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.19370.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis