Browse Element(s) Details


Os.49880.1.S1_at

Description gb:AK119271.1
DB_XREF= gi:37988894
TID=Os.49880.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49880 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-146-B08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-130-A11, full insert sequence.
FL= gb:AK119271.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g390405/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g38980Os.49390.1.A1_at11/118+24506167..24512773Chloride channel protein CLC-f, putative, expressed
LOC_Os08g38980OsAffx.30510.1.S1_at1/118+24506167..24512773Chloride channel protein CLC-f, putative, expressed
LOC_Os08g38990Os.27039.1.S1_at11/118+24513037..24516989WRKY DNA binding domain containing protein, expressed
LOC_Os08g39000OsAffx.6079.1.S1_at11/118+24524268..24525428expressed protein
LOC_Os08g39010OsAffx.17414.1.S1_at11/118+24526948..24527899hypothetical protein
LOC_Os08g39010Os.21836.1.S1_at1/118+24526948..24527899hypothetical protein
LOC_Os08g39020NANA8+24531947..24532315expressed protein
LOC_Os08g39030Os.49880.2.S1_at11/118+24532990..24535594expressed protein
LOC_Os08g39030Os.49880.2.S1_x_at10/118+24532990..24535594expressed protein
LOC_Os08g39040Os.49880.1.S1_at5/118+24536471..24538103expressed protein
LOC_Os08g39050Os.47921.1.A1_at11/118+24540287..24543440pentatricopeptide, putative, expressed
LOC_Os08g39060Os.19370.1.S1_at11/118+24544740..24547524Leucine Rich Repeat family protein, expressed
LOC_Os08g39070Os.25647.1.S1_at11/118+24548335..24551686COP9 signalosome complex subunit 6a, putative, expressed
LOC_Os08g39080Os.28195.1.S1_a_at11/118+24552443..24561690peroxisomal targeting signal 1 receptor, putative, expressed
LOC_Os08g39090Os.5444.1.S1_at11/118+24562844..24566056expressed protein
LOC_Os08g39090Os.5444.1.S2_at11/118+24562844..24566056expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49880.1.S1_at--82--5591Chr08:24537869..24537893 (25 bp)
GAAATGCACTAAAGCTCCGACACCT
LOC_Os08g39040
Os.49880.1.S1_at--656--8171Chr08:24537906..24537930 (25 bp)
GGAACCGAATGTGCCCTTTACATGA
LOC_Os08g39040
Os.49880.1.S1_at--1092--391Chr08:24537983..24538007 (25 bp)
ATCAGAGTCGCATTGGCTTGGAGTT
LOC_Os08g39040
Os.49880.1.S1_at--467--7551Chr08:24538008..24538032 (25 bp)
GTGGCCCGAGGTGTTACCATGGACA
LOC_Os08g39040
Os.49880.1.S1_at--614--6131Chr08:24538046..24538070 (25 bp)
GAGGGCACAGCTAATCCATGATATT
LOC_Os08g39040
Os.49880.1.S1_at--139--2011Chr08:24538110..24538134 (25 bp)
ACTCTTACTTGTGTATGCTTGTGCT
NONE
Os.49880.1.S1_at--465--10791Chr08:24538136..24538160 (25 bp)
TTGTTGTGATTACACTTTGCCGCCT
NONE
Os.49880.1.S1_at--619--8151Chr08:24538168..24538192 (25 bp)
GGAAGGTTCTCATATTCACCCTTTG
NONE
Os.49880.1.S1_at--389--7851Chr08:24538332..24538356 (25 bp)
GGTAGGTGCTTGTAACTCAATCTCA
NONE
Os.49880.1.S1_at--292--711Chr08:24538365..24538389 (25 bp)
ATGAGGCCACTGTAACCTTTTGTAA
NONE
Os.49880.1.S1_at--654--7071Chr08:24538394..24538418 (25 bp)
GTCAACGTCGTTGTTTTCTATATCG
NONE
Target Sequence 
GAAATGCACTAAAGCTCCGACACCTAAGCAAAACAATGGAACCGAATGTGCCCTTTACATGATTAAATGTGCTGAGGTGA
TCTGTGGTTGGTGGCGAAACCACGCTGCTGGAGGATCAGAGTCGCATTGGCTTGGAGTTGTGGCCCGAGGTGTTACCATG
GACAGCGTGGACAACTTGAGGGCACAGCTAATCCATGATATTGGACAGCTCCTCAACGGCTCATCATCATCATAGAGTCA
TACTCTTACTTGTGTATGCTTGTGCTATTGTTGTGATTACACTTTGCCGCCTTCCAACCGGAAGGTTCTCATATTCACCC
TTTGCCGCCTTTGAACCGCCGACCAAGTGTTCCTTTCTCACAATTCAATGATCCGAAAGGTGATCACTCATGAAAAAATT
GGTTCAAGTCTGGTCAGGCCACTGCAACTTAATGGGAAAATGCCGCAAAACTGCAAGTTTTCAGGTAGGTGCTTGTAACT
CAATCTCAGAGTTGTCATGAGGCCACTGTAACCTTTTGTAATCAGGTCAACGTCGTTGTTTTCTATATCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49880.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis