Browse Element(s) Details


Os.54304.1.S1_at

Description gb:M24504.1
DB_XREF= gi:530789
TID=Os.54304.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54304 (NCBI UniGene Cluster)
DEF=Oryza sativa lectin mRNA, complete cds.
PROD=lectin
FL= gb:M24504.1 gb:AK103206.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0939011/11Lectin precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g09360OsAffx.19306.1.S1_at1/114+4956193..4964722retrotransposon protein, putative, unclassified
LOC_Os04g09360OsAffx.22699.1.S1_x_at1/114+4956193..4964722retrotransposon protein, putative, unclassified
LOC_Os04g09370NANA4+4965579..4967436hypothetical protein
LOC_Os04g09380OsAffx.30226.2.S1_x_at3/114+4979038..4983943retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g09380OsAffx.442.1.S1_x_at3/114+4979038..4983943retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g09380OsAffx.442.1.S1_at2/114+4979038..4983943retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g09380OsAffx.24587.1.S1_x_at1/114+4979038..4983943retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g09380OsAffx.10158.1.S1_x_at1/114+4979038..4983943retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g09380OsAffx.30226.1.S1_x_at1/114+4979038..4983943retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g09380OsAffx.25414.1.S1_at1/114+4979038..4983943retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g09380OsAffx.9177.1.S1_x_at1/114+4979038..4983943retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g09380OsAffx.30226.4.S1_x_at1/114+4979038..4983943retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g09390Os.54304.1.S1_at11/114+4985119..4986213Lectin precursor, putative, expressed
LOC_Os04g09410OsAffx.25818.3.S1_at9/114+5005838..5008914hAT family dimerisation domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54304.1.S1_at--1134--2451Chr04:4985609..4985633 (25 bp)
AACAACTTCTGCTGCAGTGCCGGCG
LOC_Os04g09390
Os.54304.1.S1_at--44--8491Chr04:4985497..4985521 (25 bp)
TGGCTAACAACCAGAGCGTCTCTTT
LOC_Os04g09390
Os.54304.1.S1_at--230--5891Chr04:4985484..4985508 (25 bp)
GAGCGTCTCTTTCGAAGGGATCATC
LOC_Os04g09390
Os.54304.1.S1_at--382--2891Chr04:4985470..4985494 (25 bp)
AAGGGATCATCGAGTCAGTGGCTGA
LOC_Os04g09390
Os.54304.1.S1_at--292--3471Chr04:4985455..4985479 (25 bp)
CAGTGGCTGAGCTTGTGTAGATCGA
LOC_Os04g09390
Os.54304.1.S1_at--520--4431Chr04:4985417..4985441 (25 bp)
GCCATGAGCGTTTTCTGCTTTGTAT
LOC_Os04g09390
Os.54304.1.S1_at--968--10231Chr04:4985399..4985423 (25 bp)
TTTGTATGCCTCTCGGCGTACAGGG
LOC_Os04g09390
Os.54304.1.S1_at--472--8371Chr04:4985385..4985409 (25 bp)
GGCGTACAGGGCTTTTCAGCTTAGC
LOC_Os04g09390
Os.54304.1.S1_at--1067--10511Chr04:4985371..4985395 (25 bp)
TTCAGCTTAGCTGCCTTTCAATAAA
LOC_Os04g09390
Os.54304.1.S1_at--86--3531Chr04:4985325..4985349 (25 bp)
CATGCAGAGCAGTGTTGTGTACGTA
LOC_Os04g09390
Os.54304.1.S1_at--1122--7431Chr04:4985309..4985333 (25 bp)
GTGTACGTAGTTGCTCATCTGAATA
LOC_Os04g09390
Target Sequence 
AACAACTTCTGCTGCAGTGCCGGCGGCTACTGCGGCCTCGGCGGCAACTACTGCGGCTCCGGCTGCCAGAGCGGCGGCTG
CTACAAGGGTGGCGACGGCATGGCGGCCATCCTGGCTAACAACCAGAGCGTCTCTTTCGAAGGGATCATCGAGTCAGTGG
CTGAGCTTGTGTAGATCGATGAGTCGATCGTCGCCATGAGCGTTTTCTGCTTTGTATGCCTCTCGGCGTACAGGGCTTTT
CAGCTTAGCTGCCTTTCAATAAAATCACTGATCATGGCGATCGACATGCAGAGCAGTGTTGTGTACGTAGTTGCTCATCT
GAATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54304.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis