Browse Element(s) Details


OsAffx.25818.3.S1_at

Description tigr:9632.m00810
TID=OsAffx.25818.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hAT family dimerisation domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g094109/11hAT family dimerisation domain containing protein
LOC_Os03g323303/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g09380OsAffx.30226.2.S1_x_at3/114+4979038..4983943retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g09380OsAffx.442.1.S1_x_at3/114+4979038..4983943retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g09380OsAffx.442.1.S1_at2/114+4979038..4983943retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g09380OsAffx.24587.1.S1_x_at1/114+4979038..4983943retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g09380OsAffx.10158.1.S1_x_at1/114+4979038..4983943retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g09380OsAffx.30226.1.S1_x_at1/114+4979038..4983943retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g09380OsAffx.25414.1.S1_at1/114+4979038..4983943retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g09380OsAffx.9177.1.S1_x_at1/114+4979038..4983943retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g09380OsAffx.30226.4.S1_x_at1/114+4979038..4983943retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g09390Os.54304.1.S1_at11/114+4985119..4986213Lectin precursor, putative, expressed
LOC_Os04g09410OsAffx.25818.3.S1_at9/114+5005838..5008914hAT family dimerisation domain containing protein
LOC_Os04g09420NANA4+5014585..5015069hypothetical protein
LOC_Os04g09430Os.18266.1.S1_at5/114+5020358..5023010Cytochrome P450 79A1, putative, expressed
LOC_Os04g09430Os.52963.2.S1_at2/114+5020358..5023010Cytochrome P450 79A1, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25818.3.S1_at--85--3131Chr04:5007204..5007228 (25 bp)
AATTTGATGTCTAAGCTTGCTACCA
LOC_Os04g09410
OsAffx.25818.3.S1_at--749--211Chr04:5007203..5007227 (25 bp)
ATTTGATGTCTAAGCTTGCTACCAG
LOC_Os04g09410
OsAffx.25818.3.S1_at--1137--10251Chr04:5007202..5007226 (25 bp)
TTTGATGTCTAAGCTTGCTACCAGA
LOC_Os04g09410
OsAffx.25818.3.S1_at--800--8871Chr04:5007200..5007224 (25 bp)
TGATGTCTAAGCTTGCTACCAGAAA
LOC_Os04g09410
OsAffx.25818.3.S1_at--765--6271Chr04:5007199..5007223 (25 bp)
GATGTCTAAGCTTGCTACCAGAAAG
LOC_Os04g09410
OsAffx.25818.3.S1_at--10--771Chr04:5007198..5007222 (25 bp)
ATGTCTAAGCTTGCTACCAGAAAGA
LOC_Os04g09410
OsAffx.25818.3.S1_at--340--8432Chr03:18452544..18452567 (24 bp)
GGCCTGCAACCAATTCAACCTTTGT
LOC_Os03g32330
OsAffx.25818.3.S1_at--110--4152Chr03:18452546..18452567 (22 bp)
CCTGCAACCAATTCAACCTTTGTCA
LOC_Os03g32330
OsAffx.25818.3.S1_at--625--9012Chr03:18452548..18452567 (20 bp)
TGCAACCAATTCAACCTTTGTCAAA
LOC_Os03g32330
OsAffx.25818.3.S1_at--969--5151NONE
GCAACCAATTCAACCTTTGTCAAAT
NONE
OsAffx.25818.3.S1_at--1084--2631NONE
AACCAATTCAACCTTTGTCAAATGC
NONE
Target Sequence 
AATTTGATGTCTAAGCTTGCTACCAGAAAGAATGCTCAGTTTGATCCAGATTATTTCCATGTTCGTTGTGCTGCCCACAT
AGTCAATTTGGTTGTTAATGATGGCCTGCAACCAATTCAACCTTTGTCAAATGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25818.3.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis