Browse Element(s) Details


OsAffx.16585.1.S1_at

Description gb:XM_353987.1
DB_XREF= gi:35189407
TID=OsAffx.16585.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group).
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g365809/11hypothetical protein
LOC_Os11g228501/11retrotransposon protein, putative, unclassified, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g36530OsAffx.28781.1.S1_at11/117+21841734..21844044F-box domain containing protein
LOC_Os07g36544Os.10550.1.S1_at11/117+21844633..21849425D-mannose binding lectin family protein, expressed
LOC_Os07g36544Os.10550.1.S1_x_at11/117+21844633..21849425D-mannose binding lectin family protein, expressed
LOC_Os07g36560Os.30000.1.S1_at10/117+21853033..21855198Transferase family protein, expressed
LOC_Os07g36570Os.33145.1.S1_at11/117+21861415..21866821D-mannose binding lectin family protein, expressed
LOC_Os07g36580OsAffx.16585.1.S1_s_at11/117+21868352..21870747hypothetical protein
LOC_Os07g36580OsAffx.16585.1.S1_at9/117+21868352..21870747hypothetical protein
LOC_Os07g36580OsAffx.10158.1.S1_x_at1/117+21868352..21870747hypothetical protein
LOC_Os07g36590Os.32819.1.S1_at11/117+21875197..21881678KI domain interacting kinase 1, putative, expressed
LOC_Os07g36600Os.27293.2.S1_at11/117+21893171..21897033universal stress protein, putative, expressed
LOC_Os07g36600Os.27293.1.S1_a_at11/117+21893171..21897033universal stress protein, putative, expressed
LOC_Os07g36600Os.27293.1.S1_s_at11/117+21893171..21897033universal stress protein, putative, expressed
LOC_Os07g36600Os.27293.1.S1_at7/117+21893171..21897033universal stress protein, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16585.1.S1_at--460--3011Chr07:21868799..21868823 (25 bp)
AATGACAAGGGCGTGTCCCCTGTGT
LOC_Os07g36580
OsAffx.16585.1.S1_at--558--5611Chr07:21868802..21868826 (25 bp)
GACAAGGGCGTGTCCCCTGTGTCAG
LOC_Os07g36580
OsAffx.16585.1.S1_at--197--76312Chr11:12663852..12663871 (20 bp)
GGGAGACGGCGCTGGGCCCCACTCG
LOC_Os11g22850
OsAffx.16585.1.S1_at--712--2936Chr09:21236973..21236997 (25 bp)
AAGGCACGAATGGTGGTCCGATCCA
NONE
OsAffx.16585.1.S1_at--200--8611Chr07:21868896..21868920 (25 bp)
TGGTCCGATCCAAGCGGCATGGGTC
LOC_Os07g36580
OsAffx.16585.1.S1_at--136--4675Chr12:3083061..3083082 (22 bp)
GCATGGGTCCCCCTCCCGTGAAGGA
NONE
OsAffx.16585.1.S1_at--886--7251Chr07:21870063..21870411 (25 bp)
GTCCGGCGCGCCATATAGGGTATTA
LOC_Os07g36580
OsAffx.16585.1.S1_at--645--4251Chr07:21870065..21870413 (25 bp)
CCGGCGCGCCATATAGGGTATTACA
LOC_Os07g36580
OsAffx.16585.1.S1_at--376--4571Chr07:21870396..21870416 (21 bp)
GCGCGCCATATAGGGTATTACAAGA
LOC_Os07g36580
OsAffx.16585.1.S1_at--163--3531NONE
CATGCATAGCTGGTCAAAAAAGTTT
NONE
OsAffx.16585.1.S1_at--1123--4711Chr07:21871486..21871507 (22 bp)
GCTGGTCAAAAAAGTTTCAATGATC
NONE
Target Sequence 
AATGACAAGGGCGTGTCCCCTGTGTCAGGCGGGAGACGGCGCTGGGCCCCACTCGAGGACGGACGGCTGCTTAGCTTCCG
GGCGAAGGCACGAATGGTGGTCCGATCCAAGCGGCATGGGTCCCCCTCCCGTGAAGGAACTGCCGTTTTTCCAACTCCTT
TCAGCACCTGCCCACCGTTGGATTTTCACATTTTTGCTGACTGCGGCTGCAGTTCAAGTGTGCAACCCGTGTTAGGTCCG
GCGCGCCATATAGGGTATTACAAGAATTCATATGAAAAATGTATCTTACAGAGAAACGGCATCGGTCGGCAGGGGAAAAA
AAGGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAAGGAGAGAGGAACAGTAACCCGC
TACATTATCGGATAGACGAACCTGAAACAAACCAGCCATGCATAGCTGGTCAAAAAAGTTTCAATGATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16585.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis