Browse Element(s) Details


Os.27293.1.S1_at

Description gb:AK109507.1
DB_XREF= gi:32994716
TID=Os.27293.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27293 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-101-E04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-101-E04, full insert sequence.
FL= gb:AK109507.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g366007/11universal stress protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g36580OsAffx.16585.1.S1_s_at11/117+21868352..21870747hypothetical protein
LOC_Os07g36580OsAffx.16585.1.S1_at9/117+21868352..21870747hypothetical protein
LOC_Os07g36580OsAffx.10158.1.S1_x_at1/117+21868352..21870747hypothetical protein
LOC_Os07g36590Os.32819.1.S1_at11/117+21875197..21881678KI domain interacting kinase 1, putative, expressed
LOC_Os07g36600Os.27293.2.S1_at11/117+21893171..21897033universal stress protein, putative, expressed
LOC_Os07g36600Os.27293.1.S1_a_at11/117+21893171..21897033universal stress protein, putative, expressed
LOC_Os07g36600Os.27293.1.S1_s_at11/117+21893171..21897033universal stress protein, putative, expressed
LOC_Os07g36600Os.27293.1.S1_at7/117+21893171..21897033universal stress protein, putative, expressed
LOC_Os07g36610OsAffx.16586.1.S1_x_at11/117+21899949..21904590Cellulose synthase family protein, expressed
LOC_Os07g36610OsAffx.20192.1.S1_at2/117+21899949..21904590Cellulose synthase family protein, expressed
LOC_Os07g36620NANA7+21906301..21906751hypothetical protein
LOC_Os07g36630Os.52482.1.S1_at11/117+21908532..21913590Cellulose synthase family protein, expressed
LOC_Os07g36640OsAffx.16587.1.S1_at11/117+21921991..21922663hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006950biological_processresponse to stress
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27293.1.S1_at--82--5371NONE
GAAGAGCACAAGGATACTTGATCAT
NONE
Os.27293.1.S1_at--574--3211Chr07:21894267..21894287 (21 bp)
CAAGGATACTTGATCATGCTGTATG
LOC_Os07g36600
Os.27293.1.S1_at--82--631Chr07:21894252..21894276 (25 bp)
ATGCTGTATGATGATGTCCTCTTTG
LOC_Os07g36600
Os.27293.1.S1_at--727--711Chr07:21894246..21894269 (24 bp)
ATGATGATGTCCTCTTTGATCCAGC
LOC_Os07g36600
Os.27293.1.S1_at--626--711Chr07:21894246..21894266 (21 bp)
ATGATGTCCTCTTTGATCCAGCATG
LOC_Os07g36600
Os.27293.1.S1_at--431--8711NONE
TGTCCTCTTTGATCCAGCATGTAAA
NONE
Os.27293.1.S1_at--1135--3751NONE
CTCTTTGATCCAGCATGTAAAGGTT
NONE
Os.27293.1.S1_at--209--9591Chr07:21893220..21893244 (25 bp)
TCTTGATGTGCGCAGTCAATATCTG
LOC_Os07g36600
Os.27293.1.S1_at--1025--771Chr07:21893215..21893239 (25 bp)
ATGTGCGCAGTCAATATCTGCCAAA
LOC_Os07g36600
Os.27293.1.S1_at--861--9731Chr07:21893205..21893229 (25 bp)
TCAATATCTGCCAAAGGAAACTTTT
LOC_Os07g36600
Os.27293.1.S1_at--628--9491Chr07:21893171..21893195 (25 bp)
TCTACTGTTAGGAAAAGTTGGCGTT
NONE
Target Sequence 
GAAGAGCACAAGGATACTTGATCATGCTGTATGATGATGTCCTCTTTGATCCAGCATGTAAAGGTTCTAGCAGTCAACTG
TTTGCTGGGTGCTAGGTGGGGTTTCTTCTGAGGGCATTTGCTGTTCCGTTCAACTTTCACTGCCTATGTTTATTCGTGCT
TTCACTTTGTTGTATTTTATTGTCTTGTTTCATGTAGTTTTATCTGACCTACTGCTTGCACGGTTAATTTTTATGATTTA
GAATTTTTGTGCTTTCTCANCATCACAAGATCTGTTTCTGATGAAAGTTACAGTTTGANTACTTAACGAACCAAGTAACC
GTCTCCCTTTTATTTTTCTCCCTTGTTGTACTTTCCCTTAAAGTAAGATTATGGTAGATATCATGAATCTCTTGATGTGC
GCAGTCAATATCTGCCAAAGGAAACTTTTTTTTTTAATCTACTGTTAGGAAAAGTTGGCGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27293.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis