Browse Element(s) Details


Os.52482.1.S1_at

Description gb:AK067424.1
DB_XREF= gi:32977442
TID=Os.52482.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52482 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013107C16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013107C16, full insert sequence.
FL= gb:AK067424.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3663011/11Cellulose synthase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g36600Os.27293.2.S1_at11/117+21893171..21897033universal stress protein, putative, expressed
LOC_Os07g36600Os.27293.1.S1_a_at11/117+21893171..21897033universal stress protein, putative, expressed
LOC_Os07g36600Os.27293.1.S1_s_at11/117+21893171..21897033universal stress protein, putative, expressed
LOC_Os07g36600Os.27293.1.S1_at7/117+21893171..21897033universal stress protein, putative, expressed
LOC_Os07g36610OsAffx.16586.1.S1_x_at11/117+21899949..21904590Cellulose synthase family protein, expressed
LOC_Os07g36610OsAffx.20192.1.S1_at2/117+21899949..21904590Cellulose synthase family protein, expressed
LOC_Os07g36620NANA7+21906301..21906751hypothetical protein
LOC_Os07g36630Os.52482.1.S1_at11/117+21908532..21913590Cellulose synthase family protein, expressed
LOC_Os07g36640OsAffx.16587.1.S1_at11/117+21921991..21922663hypothetical protein
LOC_Os07g36660Os.28943.1.S1_x_at2/117+21938142..21941339retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0000271biological_processpolysaccharide biosynthesis
GO:0009832biological_processcell wall biosynthesis (sensu Magnoliophyta)
GO:0005783cellular_componentendoplasmic reticulum
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
GO:0016759molecular_functioncellulose synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52482.1.S1_at--533--7711Chr07:21909095..21909119 (25 bp)
GGGTGTCTCATTCAAGCTGACAGCA
LOC_Os07g36630
Os.52482.1.S1_at--1021--1731Chr07:21909011..21909035 (25 bp)
ACCATTGTTGTTCCCGACGATAGTG
LOC_Os07g36630
Os.52482.1.S1_at--86--1131Chr07:21908978..21909002 (25 bp)
AGTGAATATCTGTGCCATTGGCGCG
LOC_Os07g36630
Os.52482.1.S1_at--715--4691Chr07:21908956..21908980 (25 bp)
GCGGCAATAGGCAAGGCTCTCTTTG
LOC_Os07g36630
Os.52482.1.S1_at--119--7231Chr07:21908900..21908924 (25 bp)
GTCGCTCGGGCTGGTATTCAACGTG
LOC_Os07g36630
Os.52482.1.S1_at--741--251Chr07:21908858..21908882 (25 bp)
ATATCCATTTGCACTGGGTATCATG
LOC_Os07g36630
Os.52482.1.S1_at--856--5951Chr07:21908825..21908849 (25 bp)
GAGCAAGAGACCCTATATCCTGTTC
LOC_Os07g36630
Os.52482.1.S1_at--242--931Chr07:21908748..21908772 (25 bp)
AGGCAATGCGTTCTGGATCCGTTCG
LOC_Os07g36630
Os.52482.1.S1_at--258--3931Chr07:21908725..21908749 (25 bp)
CGGCTCCACTTTAGACGGTCAGGTG
LOC_Os07g36630
Os.52482.1.S1_at--674--9631Chr07:21908707..21908731 (25 bp)
TCAGGTGGAGCCAACTTCCCTACAA
LOC_Os07g36630
Os.52482.1.S1_at--771--6571Chr07:21908600..21908624 (25 bp)
GATTCTCAGGTTTTACTTTACATGC
LOC_Os07g36630
Target Sequence 
GGGTGTCTCATTCAAGCTGACAGCAAAACAAGTAGCAAGCAGCACCAGCGAGAAGTTTGCAGAACTGTATGATGTTCAAT
GGGCACCATTGTTGTTCCCGACGATAGTGGTGATAGCAGTGAATATCTGTGCCATTGGCGCGGCAATAGGCAAGGCTCTC
TTTGGAGGATGGTCACTGATGCAGATGGGAGATGCGTCGCTCGGGCTGGTATTCAACGTGTGGATCCTGCTGCTGATATA
TCCATTTGCACTGGGTATCATGGGAAGATGGAGCAAGAGACCCTATATCCTGTTCGTCTTGATTGTGATTTCATTTGTTA
TAATCGCATTGGCCGATATTGCCATCCAGGCAATGCGTTCTGGATCCGTTCGGCTCCACTTTAGACGGTCAGGTGGAGCC
AACTTCCCTACAAGCTGGGGGTTTTAGGATTAATTTGTATCTCCAATGTTAGCTGGTATTTGTTTTTCCCTTGTTGAGTT
TTTTTTTTTTTTTGTTGATTCTCAGGTTTTACTTTACATGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52482.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis