Browse Element(s) Details


OsAffx.16587.1.S1_at

Description tigr:9635.m03624
TID=OsAffx.16587.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3664011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g36600Os.27293.2.S1_at11/117+21893171..21897033universal stress protein, putative, expressed
LOC_Os07g36600Os.27293.1.S1_a_at11/117+21893171..21897033universal stress protein, putative, expressed
LOC_Os07g36600Os.27293.1.S1_s_at11/117+21893171..21897033universal stress protein, putative, expressed
LOC_Os07g36600Os.27293.1.S1_at7/117+21893171..21897033universal stress protein, putative, expressed
LOC_Os07g36610OsAffx.16586.1.S1_x_at11/117+21899949..21904590Cellulose synthase family protein, expressed
LOC_Os07g36610OsAffx.20192.1.S1_at2/117+21899949..21904590Cellulose synthase family protein, expressed
LOC_Os07g36620NANA7+21906301..21906751hypothetical protein
LOC_Os07g36630Os.52482.1.S1_at11/117+21908532..21913590Cellulose synthase family protein, expressed
LOC_Os07g36640OsAffx.16587.1.S1_at11/117+21921991..21922663hypothetical protein
LOC_Os07g36660Os.28943.1.S1_x_at2/117+21938142..21941339retrotransposon protein, putative, unclassified
LOC_Os07g36670NANA7+21941964..21947588retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16587.1.S1_at--201--4111Chr07:21922109..21922133 (25 bp)
CGACATGGTTGAAGCGGTCGGCAAT
LOC_Os07g36640
OsAffx.16587.1.S1_at--446--7491Chr07:21922210..21922234 (25 bp)
GTGGTGGACTGGAGGCGCATTGCCC
LOC_Os07g36640
OsAffx.16587.1.S1_at--786--7491Chr07:21922242..21922266 (25 bp)
GTGGTCCCTGGTGCCGAGGCATATT
LOC_Os07g36640
OsAffx.16587.1.S1_at--119--8511Chr07:21922250..21922274 (25 bp)
TGGTGCCGAGGCATATTCGAAAGGC
LOC_Os07g36640
OsAffx.16587.1.S1_at--164--7771Chr07:21922296..21922320 (25 bp)
GGTGACTGAGGTTGACCTGGCCGAT
LOC_Os07g36640
OsAffx.16587.1.S1_at--320--3351Chr07:21922380..21922495 (25 bp)
CGGCTCGTTGACACGCGACGGCTTG
LOC_Os07g36640
OsAffx.16587.1.S1_at--725--8293Chr09:10988973..10988995 (23 bp)
GGCTTGCCACCGCAAGATGGCCAGA
NONE
OsAffx.16587.1.S1_at--878--4111Chr07:21922500..21922524 (25 bp)
CGCAAGATGGCCAGACTGGACGAGT
LOC_Os07g36640
OsAffx.16587.1.S1_at--516--8831Chr07:21922548..21922572 (25 bp)
TGATCCATTTTTCACTCTCACGAAA
LOC_Os07g36640
OsAffx.16587.1.S1_at--858--10511Chr07:21922558..21922582 (25 bp)
TTCACTCTCACGAAAGTCACAGTCC
LOC_Os07g36640
OsAffx.16587.1.S1_at--352--3991Chr07:21922609..21922633 (25 bp)
CGTGGATAGAGTTGAAGCCCTCGAA
LOC_Os07g36640
Target Sequence 
CGACATGGTTGAAGCGGTCGGCAATGGTGGAGGTCGGTGCGACGAGGCACGGCCGGCCACAGCAGAGGACGGCGCGGCGC
ATGTGGGAACGACCGACGGCGGTGGTGGACTGGAGGCGCATTGCCCGGCGACGGTGGTCCCTGGTGCCGAGGCATATTCG
AAAGGCGGCGGGGTGCTCACTCAGGGCGGTGACTGAGGTTGACCTGGCCGATGGGCTCAGTGGCGGCGAGGCTGCCGCGG
TGGAGGACGAAGGCGACGATGATGCGACCGGCGGCTCGTTGACACGCGACGGCTTGCCACCGCAAGATGGCCAGACTGGA
CGAGTGGACGGGCTAGTGTGGGGAGAGTTGATCCATTTTTCACTCTCACGAAAGTCACAGTCCCACCCTTTCCCTCTCCA
ACCCAACCACGTGGATAGAGTTGAAGCCCTCGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16587.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis