Browse Element(s) Details


Os.32819.1.S1_at

Description gb:AK102758.1
DB_XREF= gi:32987967
TID=Os.32819.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.32819 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative S-receptor kinase (P0534A03.38), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033107C10, full insert sequence.
FL= gb:AK102758.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3659011/11KI domain interacting kinase 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g36560Os.30000.1.S1_at10/117+21853033..21855198Transferase family protein, expressed
LOC_Os07g36570Os.33145.1.S1_at11/117+21861415..21866821D-mannose binding lectin family protein, expressed
LOC_Os07g36580OsAffx.16585.1.S1_s_at11/117+21868352..21870747hypothetical protein
LOC_Os07g36580OsAffx.16585.1.S1_at9/117+21868352..21870747hypothetical protein
LOC_Os07g36580OsAffx.10158.1.S1_x_at1/117+21868352..21870747hypothetical protein
LOC_Os07g36590Os.32819.1.S1_at11/117+21875197..21881678KI domain interacting kinase 1, putative, expressed
LOC_Os07g36600Os.27293.2.S1_at11/117+21893171..21897033universal stress protein, putative, expressed
LOC_Os07g36600Os.27293.1.S1_a_at11/117+21893171..21897033universal stress protein, putative, expressed
LOC_Os07g36600Os.27293.1.S1_s_at11/117+21893171..21897033universal stress protein, putative, expressed
LOC_Os07g36600Os.27293.1.S1_at7/117+21893171..21897033universal stress protein, putative, expressed
LOC_Os07g36610OsAffx.16586.1.S1_x_at11/117+21899949..21904590Cellulose synthase family protein, expressed
LOC_Os07g36610OsAffx.20192.1.S1_at2/117+21899949..21904590Cellulose synthase family protein, expressed
LOC_Os07g36620NANA7+21906301..21906751hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0004672molecular_functionprotein kinase activity
GO:0004675molecular_functiontransmembrane receptor protein serine/threonine kinase activity
GO:0005529molecular_functionsugar binding
GO:0016301molecular_functionkinase activity
GO:0030246molecular_functioncarbohydrate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.32819.1.S1_at--628--6131Chr07:21875832..21875856 (25 bp)
GAGGGCTTTGAGCTTTCATGGTCAA
LOC_Os07g36590
Os.32819.1.S1_at--165--7811Chr07:21875813..21875837 (25 bp)
GGTCAACAAGACTCCCTAAACATTG
LOC_Os07g36590
Os.32819.1.S1_at--391--5931Chr07:21875632..21875656 (25 bp)
GAGCATCGTGCTCACTTCGACAAGT
LOC_Os07g36590
Os.32819.1.S1_at--1060--4091Chr07:21875615..21875639 (25 bp)
CGACAAGTCTTGAGATGCATCCACA
LOC_Os07g36590
Os.32819.1.S1_at--405--2751Chr07:21875560..21875584 (25 bp)
AAGAACGTCCTGATATCCCTGCGGT
LOC_Os07g36590
Os.32819.1.S1_at--140--551Chr07:21875546..21875570 (25 bp)
ATCCCTGCGGTCATACTGATGTTGA
LOC_Os07g36590
Os.32819.1.S1_at--787--8851Chr07:21875479..21875503 (25 bp)
TGATGCTCCATGGTCGTTCGGCTGA
LOC_Os07g36590
Os.32819.1.S1_at--723--2911Chr07:21875435..21875459 (25 bp)
AAGGATCAGAGCCACTCCATCGGTA
LOC_Os07g36590
Os.32819.1.S1_at--685--1991Chr07:21875422..21875446 (25 bp)
ACTCCATCGGTACTGTGTCAATGAC
LOC_Os07g36590
Os.32819.1.S1_at--750--6491Chr07:21875383..21875407 (25 bp)
GATAGCTTAGCAGGGACAACATTGT
LOC_Os07g36590
Os.32819.1.S1_at--897--10651Chr07:21875327..21875351 (25 bp)
TTCCCCTTTTCTCTGCTATTACAAA
LOC_Os07g36590
Target Sequence 
GAGGGCTTTGAGCTTTCATGGTCAACAAGACTCCCTAAACATTGCAGGATTTGCATGGCGACAATGGAATGAAGACAAGG
GCGAGGAACTGATTGATCCATTGATAAGAGCATCGTGCTCACTTCGACAAGTCTTGAGATGCATCCACATTGCATTGCTA
TGTGTTCAAGATCATGCGCAAGAACGTCCTGATATCCCTGCGGTCATACTGATGTTGAGCANGCGACAGCTCCNAGCCTT
CCCATGCCAAGACCGCCTACCCTGATGCTCCATGGTCGTTCGGCTGAGACGAGCAAATCAAGTGAGAAGGATCAGAGCCA
CTCCATCGGTACTGTGTCAATGACACAATTGCATGGAAGATAGCTTAGCAGGGACAACATTGTGAAAATCATTAACAGCT
NGGTNGTTCTTTTTTTCCCCTTTTCTCTGCTATTACAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.32819.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis