Browse Element(s) Details


Os.10550.1.S1_at

Description gb:NM_185763.1
DB_XREF= gi:34898611
GEN=P0534A03.32
TID=Os.10550.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.10550 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative S-receptor kinase (P0534A03.32), mRNA.
PROD=putative S-receptor kinase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3654411/11D-mannose binding lectin family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g36480Os.12378.1.S1_at7/117+21817845..21820337vacuolar ATP synthase subunit H 2, putative, expressed
LOC_Os07g36490Os.46046.1.A1_at10/117+21821318..21823558RNA recognition motif family protein, expressed
LOC_Os07g36500NANA7+21825524..21826070Histone H4, putative, expressed
LOC_Os07g36510OsAffx.8277.2.S1_at1/117+21826330..21829284hypothetical protein
LOC_Os07g36510OsAffx.21885.1.S1_at1/117+21826330..21829284hypothetical protein
LOC_Os07g36520OsAffx.22562.1.S1_at11/117+21835300..21838224F-box domain containing protein
LOC_Os07g36530OsAffx.28781.1.S1_at11/117+21841734..21844044F-box domain containing protein
LOC_Os07g36544Os.10550.1.S1_at11/117+21844633..21849425D-mannose binding lectin family protein, expressed
LOC_Os07g36544Os.10550.1.S1_x_at11/117+21844633..21849425D-mannose binding lectin family protein, expressed
LOC_Os07g36560Os.30000.1.S1_at10/117+21853033..21855198Transferase family protein, expressed
LOC_Os07g36570Os.33145.1.S1_at11/117+21861415..21866821D-mannose binding lectin family protein, expressed
LOC_Os07g36580OsAffx.16585.1.S1_s_at11/117+21868352..21870747hypothetical protein
LOC_Os07g36580OsAffx.16585.1.S1_at9/117+21868352..21870747hypothetical protein
LOC_Os07g36580OsAffx.10158.1.S1_x_at1/117+21868352..21870747hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0016020cellular_componentmembrane
GO:0004672molecular_functionprotein kinase activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0004675molecular_functiontransmembrane receptor protein serine/threonine kinase activity
GO:0016301molecular_functionkinase activity
GO:0019199molecular_functiontransmembrane receptor protein kinase activity
GO:0030246molecular_functioncarbohydrate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10550.1.S1_at--522--3631Chr07:21845503..21845527 (25 bp)
CTTCGGCGTCGCGAGGATCTTCGGC
LOC_Os07g36544
Os.10550.1.S1_at--854--5631Chr07:21845475..21845499 (25 bp)
GACACCGACTCGCACACCAGAAAAG
LOC_Os07g36544
Os.10550.1.S1_at--620--1991Chr07:21845468..21845492 (25 bp)
ACTCGCACACCAGAAAAGTCGTCGG
LOC_Os07g36544
Os.10550.1.S1_at--455--3371Chr07:21845462..21845485 (24 bp)
CACCAGAAAAGTCGTCGGGACATAT
LOC_Os07g36544
Os.10550.1.S1_at--1028--1911Chr07:21845314..21845338 (25 bp)
ACGGCGTGTTCTCGGTGAAGTCCGA
LOC_Os07g36544
Os.10550.1.S1_at--468--5371Chr07:21845244..21845268 (25 bp)
GAAGAACCGCGGGATGTACAGCAGC
LOC_Os07g36544
Os.10550.1.S1_at--437--751Chr07:21845231..21845255 (25 bp)
ATGTACAGCAGCGGCGAGCAGACGA
LOC_Os07g36544
Os.10550.1.S1_at--554--4471Chr07:21845122..21845230 (25 bp)
GCCTGCTCAGCCACGCGTGGAGGCT
LOC_Os07g36544
Os.10550.1.S1_at--254--8031Chr07:21845095..21845119 (25 bp)
GGAGGGAGGGCAACGCGCTGGCGCT
LOC_Os07g36544
Os.10550.1.S1_at--917--2111Chr07:21844954..21844978 (25 bp)
ACATGGCGGCGGTGTTCATGATGCT
LOC_Os07g36544
Os.10550.1.S1_at--570--711Chr07:21844937..21844961 (25 bp)
ATGATGCTGGGCAACCTCAGCGCGG
LOC_Os07g36544
Target Sequence 
CTTCGGCGTCGCGAGGATCTTCGGCGACGACACCGACTCGCACACCAGAAAAGTCGTCGGGACATATGGGTACATGTCGC
CGGAGTACGCGATGGACGGCGTGTTCTCGGTGAAGTCCGACGTGTTCAGCTTCGGCGTGCTGGTGCTGGAGCTCGTCAGC
GGCCGGAAGAACCGCGGGATGTACAGCAGCGGCGAGCAGACGAGCCTGCTCAGCCACGCGTGGAGGCTGTGGAGGGAGGG
CAACGCGCTGGCGCTGCTCGACGAGGCGGTGGCCGGCGGCGGCGGCGGCGGGGGGTACAGCAGGTCGGAGGTGCTGCGGT
GCGTGCAGGTGGGGCTCCTGTGCGTGCAGGAGCGGCCGGAGGACCGGCCGCACATGGCGGCGGTGTTCATGATGCTGGGC
AACCTCAGCGCGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10550.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis