Browse Element(s) Details


Os.12378.1.S1_at

Description gb:AK104331.1
DB_XREF= gi:32989540
TID=Os.12378.1
CNT=39
FEA=FLmRNA
TIER=FL+Stack
STK=11
UG=Os.12378 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative vacuolar ATP synthase subunit H (P0534A03.24), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-032-D11, full insert sequence.
FL= gb:AK104331.1 gb:AK067714.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g364807/11vacuolar ATP synthase subunit H 2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g36430Os.31021.1.S1_at10/117+21796589..21797208expressed protein
LOC_Os07g36439OsAffx.1550.1.S1_at2/117+21798568..21798777NA
LOC_Os07g36450Os.10560.1.S1_at11/117+21801037..21803585pentatricopeptide, putative, expressed
LOC_Os07g36460OsAffx.28779.1.S1_at10/117+21812540..21814354Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os07g36470NANA7+21814902..21817249Vacuolar ATP synthase subunit H, putative, expressed
LOC_Os07g36480Os.12378.1.S1_at7/117+21817845..21820337vacuolar ATP synthase subunit H 2, putative, expressed
LOC_Os07g36490Os.46046.1.A1_at10/117+21821318..21823558RNA recognition motif family protein, expressed
LOC_Os07g36500NANA7+21825524..21826070Histone H4, putative, expressed
LOC_Os07g36510OsAffx.8277.2.S1_at1/117+21826330..21829284hypothetical protein
LOC_Os07g36510OsAffx.21885.1.S1_at1/117+21826330..21829284hypothetical protein
LOC_Os07g36520OsAffx.22562.1.S1_at11/117+21835300..21838224F-box domain containing protein
LOC_Os07g36530OsAffx.28781.1.S1_at11/117+21841734..21844044F-box domain containing protein
LOC_Os07g36544Os.10550.1.S1_at11/117+21844633..21849425D-mannose binding lectin family protein, expressed
LOC_Os07g36544Os.10550.1.S1_x_at11/117+21844633..21849425D-mannose binding lectin family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12378.1.S1_at--870--411Chr07:21819504..21819528 (25 bp)
ATCTTGACTGGTCTCCAATGCACAA
LOC_Os07g36480
Os.12378.1.S1_at--549--2191Chr07:21819525..21819549 (25 bp)
ACAAAGACCCAAGTTTCTGGCGCGA
LOC_Os07g36480
Os.12378.1.S1_at--568--6531NONE
GATTTCCAGATTCTACGTGTGCTTA
NONE
Os.12378.1.S1_at--725--671Chr07:21820104..21820128 (25 bp)
ATGACAATCATCGACACATCGGCCG
LOC_Os07g36480
Os.12378.1.S1_at--399--9591Chr07:21820240..21820264 (25 bp)
TCATGAACCACGAGAACGCCGAAGT
LOC_Os07g36480
Os.12378.1.S1_at--429--7391Chr07:21820263..21820287 (25 bp)
GTGAGGAAGAATGCCCTGCTCTGCG
LOC_Os07g36480
Os.12378.1.S1_at--766--6151Chr07:21820292..21820316 (25 bp)
GAGGCTTTTCCTTGGTGCGAAGTAC
LOC_Os07g36480
Os.12378.1.S1_at--623--4591Chr07:21820308..21820332 (25 bp)
GCGAAGTACGCGAGCTTCCTGCAGA
LOC_Os07g36480
Os.12378.1.S1_at--830--5531Chr07:21820388..21820412 (25 bp)
GAAACACCAGGCCATTTGTCATAAA
NONE
Os.12378.1.S1_at--886--111Chr07:21820450..21820474 (25 bp)
ATTCTTGTCCAGTATATCCTGTCGT
NONE
Os.12378.1.S1_at--226--9671Chr07:21820509..21820533 (25 bp)
TCAGCTATTCCTTGCTCGATGTAAT
NONE
Target Sequence 
ATCTTGACTGGTCTCCAATGCACAAAGACCCAAGTTTCTGGCGCGAGAACATTAATAATTTTGAAGAAAATGATTTCCAG
ATTCTACGTGTGCTTATGACAATCATCGACACATCGGCCGACACGACTGCTCTTGCTGTCGCCTGCTATGACCTCTCACA
GTTCCTTCAGTACCACCCTTCTGGGCGCATTGTGGTGGCAGATCTGAAGGCGAAGGACCGAGTGATGAAGCTCATGAACC
ACGAGAACGCCGAAGTGAGGAAGAATGCCCTGCTCTGCGTGCAGAGGCTTTTCCTTGGTGCGAAGTACGCGAGCTTCCTG
CAGACCTAAGACCCAGACAAGAAACTCTTGAAGTTTTGTATTTATGCTTTAGAGCCAGAGAAACACCAGGCCATTTGTCA
TAAATGGTGAAAACCATGATTGAGAAAGACAGACCTCGAAAATTCTTGTCCAGTATATCCTGTCGTTATTTCATTTACTA
AACCGATGTATAATAAATAATCAGCTATTCCTTGCTCGATGTAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12378.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis