Browse Element(s) Details


Os.10560.1.S1_at

Description gb:AK109365.2
DB_XREF= gi:42821682
TID=Os.10560.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=5
UG=Os.10560 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0534A03.20 (P0534A03.20), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-206-H01, full insert sequence.
FL= gb:AK073657.1 gb:AK109365.2
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3645011/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g36410Os.44707.1.S1_at11/117+21781555..21784842expressed protein
LOC_Os07g36410Os.44707.2.S1_x_at11/117+21781555..21784842expressed protein
LOC_Os07g36420Os.4895.1.S1_at11/117+21786984..21792146proteasome inhibitor, putative, expressed
LOC_Os07g36430Os.31021.1.S1_at10/117+21796589..21797208expressed protein
LOC_Os07g36439OsAffx.1550.1.S1_at2/117+21798568..21798777NA
LOC_Os07g36450Os.10560.1.S1_at11/117+21801037..21803585pentatricopeptide, putative, expressed
LOC_Os07g36460OsAffx.28779.1.S1_at10/117+21812540..21814354Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os07g36470NANA7+21814902..21817249Vacuolar ATP synthase subunit H, putative, expressed
LOC_Os07g36480Os.12378.1.S1_at7/117+21817845..21820337vacuolar ATP synthase subunit H 2, putative, expressed
LOC_Os07g36490Os.46046.1.A1_at10/117+21821318..21823558RNA recognition motif family protein, expressed
LOC_Os07g36500NANA7+21825524..21826070Histone H4, putative, expressed
LOC_Os07g36510OsAffx.8277.2.S1_at1/117+21826330..21829284hypothetical protein
LOC_Os07g36510OsAffx.21885.1.S1_at1/117+21826330..21829284hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006810biological_processtransport
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10560.1.S1_at--162--1311Chr07:21801602..21801626 (25 bp)
AGATGAGAACCTTTTCCCTGACGCA
LOC_Os07g36450
Os.10560.1.S1_at--120--6571Chr07:21801552..21801576 (25 bp)
GATTCTTGAGATACGGTTCCCCATC
LOC_Os07g36450
Os.10560.1.S1_at--226--671Chr07:21801502..21801526 (25 bp)
ATGAAAAAGTCACCTGATCCTCCGG
LOC_Os07g36450
Os.10560.1.S1_at--1035--9931Chr07:21801441..21801465 (25 bp)
TACCGCACCCACTTTTAAGGAACAG
LOC_Os07g36450
Os.10560.1.S1_at--899--3111Chr07:21801356..21801380 (25 bp)
AATATTTGGTCTGCGCTGAGGTTGA
LOC_Os07g36450
Os.10560.1.S1_at--680--7931Chr07:21801331..21801355 (25 bp)
GGATTCAACGACTTCATGCACCTTC
LOC_Os07g36450
Os.10560.1.S1_at--962--9031Chr07:21801315..21801339 (25 bp)
TGCACCTTCTGCGTTTGGACTTCAT
LOC_Os07g36450
Os.10560.1.S1_at--164--8131Chr07:21801299..21801323 (25 bp)
GGACTTCATTCGGATTACCTGCATC
LOC_Os07g36450
Os.10560.1.S1_at--54--1391Chr07:21801174..21801198 (25 bp)
AGACCATTCCATTAGCTGTACTGTA
LOC_Os07g36450
Os.10560.1.S1_at--463--171Chr07:21801131..21801155 (25 bp)
ATTTTGTTGTTCAGGCAATCTCTTA
LOC_Os07g36450
Os.10560.1.S1_at--1069--131Chr07:21801099..21801123 (25 bp)
AGGCCTTTTATTCACAAATGCCACT
LOC_Os07g36450
Target Sequence 
AGATGAGAACCTTTTCCCTGACGCACAGACATATGCTGAAGTCATAAGAGGATTCTTGAGATACGGTTCCCCATCAGACG
CAATGAACATTTATGAGGAAATGAAAAAGTCACCTGATCCTCCGGAAGAATTACCNTTCAGGGTATTATTGAAGGGTCTT
TTACCGCACCCACTTTTAAGGAACAGAGTGAAGCAAGATTTTGAAGAATTGTTTCCGGAAAGGCATATCTATGATCCCCC
AGAAGAAATATTTGGTCTGCGCTGAGGTTGAGGATTCAACGACTTCATGCACCTTCTGCGTTTGGACTTCATTCGGATTA
CCTGCATCTCCAGAAGTTCTCCAGAATTTGATGTTTGGAGTGGAAATCTGTCAGGTGAAAGATTAAGTTATCGATGATCA
TGCTTAAGAGAGGTAGACAGAAACAAACAGACCATTCCATTAGCTGTACTGTAATATCTATGGTTACGGAAATTTTGTTG
TTCAGGCAATCTCTTAAAATATCAGGCCTTTTATTCACAAATGCCACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10560.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis