Browse Element(s) Details


OsAffx.28779.1.S1_at

Description tigr:9635.m03605
TID=OsAffx.28779.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3646010/11Helix-loop-helix DNA-binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g36420Os.4895.1.S1_at11/117+21786984..21792146proteasome inhibitor, putative, expressed
LOC_Os07g36430Os.31021.1.S1_at10/117+21796589..21797208expressed protein
LOC_Os07g36439OsAffx.1550.1.S1_at2/117+21798568..21798777NA
LOC_Os07g36450Os.10560.1.S1_at11/117+21801037..21803585pentatricopeptide, putative, expressed
LOC_Os07g36460OsAffx.28779.1.S1_at10/117+21812540..21814354Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os07g36470NANA7+21814902..21817249Vacuolar ATP synthase subunit H, putative, expressed
LOC_Os07g36480Os.12378.1.S1_at7/117+21817845..21820337vacuolar ATP synthase subunit H 2, putative, expressed
LOC_Os07g36490Os.46046.1.A1_at10/117+21821318..21823558RNA recognition motif family protein, expressed
LOC_Os07g36500NANA7+21825524..21826070Histone H4, putative, expressed
LOC_Os07g36510OsAffx.8277.2.S1_at1/117+21826330..21829284hypothetical protein
LOC_Os07g36510OsAffx.21885.1.S1_at1/117+21826330..21829284hypothetical protein
LOC_Os07g36520OsAffx.22562.1.S1_at11/117+21835300..21838224F-box domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28779.1.S1_at--358--6211Chr07:21812764..21812788 (25 bp)
GAGGCTCAACGGCAACATCTTCGCG
LOC_Os07g36460
OsAffx.28779.1.S1_at--835--2911Chr07:21813049..21813073 (25 bp)
AAGGAGGCCACCTTGTCGGACGCGA
LOC_Os07g36460
OsAffx.28779.1.S1_at--105--8731Chr07:21813062..21813086 (25 bp)
TGTCGGACGCGATCGAACACATCAA
LOC_Os07g36460
OsAffx.28779.1.S1_at--590--5451Chr07:21813096..21813120 (25 bp)
GAACGAGGTTCTTGAGCTGCAGCGC
LOC_Os07g36460
OsAffx.28779.1.S1_at--29--2011Chr07:21813131..21813155 (25 bp)
ACTCACCCGGTGAGGCTTGGGAGAA
LOC_Os07g36460
OsAffx.28779.1.S1_at--1021--5951NONE
GAGAACGCCCATTATCAGGGTCAGG
NONE
OsAffx.28779.1.S1_at--439--3171Chr07:21813745..21813769 (25 bp)
AATTGATCTCTCTTGGGTCATGCAA
LOC_Os07g36460
OsAffx.28779.1.S1_at--1009--8511Chr07:21813823..21813847 (25 bp)
TGGAAGCACTCTGCAGCTACAAAGT
LOC_Os07g36460
OsAffx.28779.1.S1_at--1153--2311Chr07:21813843..21813867 (25 bp)
AAAGTGCAAGTGCTCAGCCTGAACA
LOC_Os07g36460
OsAffx.28779.1.S1_at--540--8971Chr07:21813862..21813886 (25 bp)
TGAACACCATATCCTTCTACGGCTA
LOC_Os07g36460
OsAffx.28779.1.S1_at--949--1931Chr07:21813880..21813904 (25 bp)
ACGGCTACGCAGAGAGTTTCTTCAC
LOC_Os07g36460
Target Sequence 
GAGGCTCAACGGCAACATCTTCGCGCTCAGGGCGATGAGCAAGGAGGCCACCTTGTCGGACGCGATCGAACACATCAAGA
ATCTCCAGAACGAGGTTCTTGAGCTGCAGCGCCAGCTCGGCGACTCACCCGGTGAGGCTTGGGAGAAGCAATGCAGCGCG
TCCTGCTCTGAATCCTTCGTCCCCACTGAGAACGCCCATTATCAGGGTCAGGTGGAATTGATCTCTCTTGGGTCATGCAA
GTATAACCTGAAGATCTTCTGGACCAAGAGGGCAGGCCTCTTCACCAAGGTGCTGGAAGCACTCTGCAGCTACAAAGTGC
AAGTGCTCAGCCTGAACACCATATCCTTCTACGGCTACGCAGAGAGTTTCTTCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28779.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis