Browse Element(s) Details


OsAffx.21885.1.S1_at

Description gb:NM_189722.1
DB_XREF= gi:34906527
GEN=P0432C03.21
TID=OsAffx.21885.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0432C03.21 (P0432C03.21), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g187042/11hypothetical protein
LOC_Os07g365101/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g18670Os.2741.4.S1_x_at3/1110+9150549..9156702retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g18700OsAffx.20519.1.S1_at9/1110+9170420..9173673hypothetical protein
LOC_Os10g18700Os.38286.1.S1_at7/1110+9170420..9173673hypothetical protein
LOC_Os10g18700OsAffx.20519.2.S1_at5/1110+9170420..9173673hypothetical protein
LOC_Os10g18700OsAffx.505.1.S1_at1/1110+9170420..9173673hypothetical protein
LOC_Os10g18704OsAffx.21885.1.S1_at2/1110+9175594..9176068hypothetical protein
LOC_Os10g18710OsAffx.16467.1.S1_at6/1110+9181256..9182327hypothetical protein
LOC_Os10g18710Os.26886.2.S1_s_at3/1110+9181256..9182327hypothetical protein
LOC_Os10g18710Os.26886.6.S1_s_at2/1110+9181256..9182327hypothetical protein
LOC_Os10g18720NANA10+9182526..9184797hypothetical protein
LOC_Os10g18730Os.24831.1.S1_x_at9/1110+9188282..9189415retrotransposon protein, putative, unclassified
LOC_Os10g18730Os.24831.3.S1_x_at9/1110+9188282..9189415retrotransposon protein, putative, unclassified
LOC_Os10g18730Os.24831.3.S1_s_at1/1110+9188282..9189415retrotransposon protein, putative, unclassified
LOC_Os10g18730Os.24831.4.S1_x_at1/1110+9188282..9189415retrotransposon protein, putative, unclassified
LOC_Os10g18740Os.26886.1.S1_x_at3/1110+9193232..9201170transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g18740Os.26886.3.S1_x_at1/1110+9193232..9201170transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21885.1.S1_at--1097--3916Chr08:20358130..20358440 (25 bp)
CTGGCGACGAGCTCCGATGTGGACC
NONE
OsAffx.21885.1.S1_at--910--1839Chr08:20358422..20358500 (25 bp)
ACGAGCTCCGATGTGGACCGTGGAC
NONE
OsAffx.21885.1.S1_at--392--5631NONE
GACACCCAGCTCCTGCAGATGGATA
NONE
OsAffx.21885.1.S1_at--688--4171NONE
CCCAGCTCCTGCAGATGGATAGGAT
NONE
OsAffx.21885.1.S1_at--239--7951Chr01:41714365..41714389 (25 bp)
GGATAGGATGAAGGCCCGGACTCAC
NONE
OsAffx.21885.1.S1_at--176--891Chr01:41714354..41714378 (25 bp)
AGGCCCGGACTCACAGCGGGATCGA
NONE
OsAffx.21885.1.S1_at--1098--1992Chr03:7042891..7043013 (25 bp)
ACTCACAGCGGGATCGACGGCCGGC
NONE
OsAffx.21885.1.S1_at--451--3351Chr01:41714258..41714277 (20 bp)
CACGCAGATGGAGCCAAGGGCAACG
NONE
OsAffx.21885.1.S1_at--443--1731Chr01:41714069..41714093 (25 bp)
ACCAGGCGGCAATCCAACGACCATG
NONE
OsAffx.21885.1.S1_at--618--3651Chr01:41714012..41714036 (25 bp)
CTCTTCTCCCCGAGCGGGTCTTATT
NONE
OsAffx.21885.1.S1_at--395--5891Chr01:41714001..41714025 (25 bp)
GAGCGGGTCTTATTCCCAGCCTGCG
NONE
Target Sequence 
CTGGCGACGAGCTCCGATGTGGACCGTGGACGGGGGAGGATGCGGCTGCCGGCGACGAGGTTCGGGTTCAGTGTGGAGCG
TGGATGGGGGAGGACGCGGCCGCCGGCGACGATGCCTCGACACCTCGACACCCAGCTCCTGCAGATGGATAGGATGAAGG
CCCGGACTCACAGCGGGATCGACGGCCGGCGACGAAGGCGCCGACCGGAGAGGGCCCGCAACGGAGTTGGGGCGCCGGCG
GAGGGCGGACCGGCCGGCCACGCAGATGGAGCCAAGGGCAACGGTGCTGGAGCTCCCGGCGGCAAATCCGGCGACCACGT
CGCCGATGGCCACGTCGCCGATGGCCACGTCGCCGGTGATGGAGTTGGGGCACCGGCGGAGAGCGCACCGGCCGGCCACG
CGGATGGAGCACCAGGCGGCAATCCAACGACCATGTTGCCGGCGGCCGCGTCTCCGGTGGCCACGTCCTCTTCTCCCCGA
GCGGGTCTTATTCCCAGCCTGCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21885.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis