Browse Element(s) Details


Os.51415.2.S1_at

Description gb:AK099601.1
DB_XREF= gi:32984810
TID=Os.51415.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51415 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013047F07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013047F07, full insert sequence.
FL= gb:AK099601.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3480011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g34760Os.14243.1.S1_at11/115+20537737..20545104expressed protein
LOC_Os05g34760OsAffx.22564.2.S1_at2/115+20537737..20545104expressed protein
LOC_Os05g34770OsAffx.27166.1.S1_at11/115+20546857..20549136Cytochrome c, putative, expressed
LOC_Os05g34770Os.10312.1.S1_at9/115+20546857..20549136Cytochrome c, putative, expressed
LOC_Os05g34770Os.57469.1.S1_x_at8/115+20546857..20549136Cytochrome c, putative, expressed
LOC_Os05g34780Os.27987.1.S1_at10/115+20553243..20560169retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os05g34780Os.38751.1.A1_at8/115+20553243..20560169retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os05g34780OsAffx.8469.1.S1_x_at1/115+20553243..20560169retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os05g34780OsAffx.1197.1.S1_x_at1/115+20553243..20560169retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os05g34790Os.51415.1.S1_at11/115+20563271..20565837GYF domain containing protein, expressed
LOC_Os05g34800Os.51415.2.S1_at11/115+20565099..20567342expressed protein
LOC_Os05g34800OsAffx.24510.1.S1_x_at1/115+20565099..20567342expressed protein
LOC_Os05g34810OsAffx.14964.1.S1_at11/115+20568066..20568638hypothetical protein
LOC_Os05g34820Os.11597.1.S1_at11/115+20579841..20585418expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51415.2.S1_at--403--10191Chr05:20565639..20565663 (25 bp)
TATATACATACACCGCCTGACTGGC
LOC_Os05g34800
Os.51415.2.S1_at--699--7391Chr05:20565509..20565533 (25 bp)
GTGAGGCTCCTGATTAGTGCTAACT
LOC_Os05g34800
Os.51415.2.S1_at--738--6091Chr05:20565450..20565474 (25 bp)
GAGTCACAAGATTGGCCTGTTCTCC
LOC_Os05g34800
Os.51415.2.S1_at--1016--5331Chr05:20565406..20565430 (25 bp)
GAAGTATCCAGCTTTCGACCAGTGA
LOC_Os05g34800
Os.51415.2.S1_at--416--5631Chr05:20565322..20565346 (25 bp)
GACACTTGCGTGCTCTGAGATTTCT
LOC_Os05g34800
Os.51415.2.S1_at--884--8891Chr05:20565307..20565331 (25 bp)
TGAGATTTCTTCCTTCGCTTCGACA
LOC_Os05g34800
Os.51415.2.S1_at--250--5651Chr05:20565286..20565310 (25 bp)
GACAGCTTTCTGACCACTGCATAAT
LOC_Os05g34800
Os.51415.2.S1_at--712--911Chr05:20565259..20565283 (25 bp)
AGGCTTAGCTTCATGTTGTCTCGTA
LOC_Os05g34800
Os.51415.2.S1_at--660--1271Chr05:20565207..20565231 (25 bp)
AGATCAACAGTCATGTCTCCACTTT
LOC_Os05g34800
Os.51415.2.S1_at--9--771Chr05:20565195..20565219 (25 bp)
ATGTCTCCACTTTTACCATGCAGAT
LOC_Os05g34800
Os.51415.2.S1_at--672--2511Chr05:20565145..20565169 (25 bp)
AACTTGACCTGGGTTGACAGCTGCA
LOC_Os05g34800
Target Sequence 
TATATACATACACCGCCTGACTGGCCTCCCCCACAATACTACAGAGGGGCAATATGTCACAAGAATTGAGGCCCTCCTGC
ATTCTGCCATATATGTAGATACATCTAGTAGACATATAGTTGGTTAAACAGTGAGGCTCCTGATTAGTGCTAACTTGTCA
GCAGCAAAGCATCTTTGAGCAAGATGGCAGAGTCACAAGATTGGCCTGTTCTCCAGACTCTAAAATCTTCCTTGAAGTAT
CCAGCTTTCGACCAGTGACGCAGAATCCGCAGCGGAAATGGCCCCTGTTCGTCACCTTGAGGATCATTGTAATACCAGAC
ACTTGCGTGCTCTGAGATTTCTTCCTTCGCTTCGACAGCTTTCTGACCACTGCATAATTTAGGCTTAGCTTCATGTTGTC
TCGTACCATGGTCCTCACTTCCATCAGAATCCAGATCAACAGTCATGTCTCCACTTTTACCATGCAGATCATCTTCACCG
TCATCAATGTCAATAACTTGACCTGGGTTGACAGCTGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51415.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis