Browse Element(s) Details


OsAffx.24510.1.S1_x_at

Description gb:NM_186689.1
DB_XREF= gi:34900463
GEN=OSJNBa0061L20.7
TID=OsAffx.24510.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein~predicted by GeneMark.hmm etc. (OSJNBa0061L20.7), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1292011/11hypothetical protein
LOC_Os02g302801/11hypothetical protein
LOC_Os05g348001/11expressed protein
LOC_Os01g418901/11NB-ARC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g12890Os.27175.1.S1_a_at10/117+7392790..7396016ZIP zinc/iron transport family protein, expressed
LOC_Os07g12900OsAffx.10206.1.S1_at11/117+7404049..7407857cadmium-translocating P-type ATPase family protein, expressed
LOC_Os07g12910Os.28742.2.S1_at10/117+7412879..7416346PHD finger protein, putative, expressed
LOC_Os07g12910Os.28742.1.S1_at10/117+7412879..7416346PHD finger protein, putative, expressed
LOC_Os07g12920OsAffx.24510.1.S1_x_at11/117+7417152..7418006hypothetical protein
LOC_Os07g12940OsAffx.22429.1.S1_at11/117+7424213..7424729hypothetical protein
LOC_Os07g12950OsAffx.10155.1.S1_at3/117+7426994..7434261transposon protein, putative, Mutator sub-class
LOC_Os07g12950Os.41248.4.S1_x_at2/117+7426994..7434261transposon protein, putative, Mutator sub-class
LOC_Os07g12950OsAffx.15069.1.S1_at1/117+7426994..7434261transposon protein, putative, Mutator sub-class
LOC_Os07g12950OsAffx.10155.1.S1_x_at1/117+7426994..7434261transposon protein, putative, Mutator sub-class
LOC_Os07g12950OsAffx.20187.1.S1_at1/117+7426994..7434261transposon protein, putative, Mutator sub-class
LOC_Os07g12950OsAffx.380.1.S1_at1/117+7426994..7434261transposon protein, putative, Mutator sub-class
LOC_Os07g12959NANA7+7436149..7437641NA
LOC_Os07g12970NANA7+7439810..7443009hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009814biological_processdefense response to pathogen, incompatible interaction
GO:0005737cellular_componentcytoplasm
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24510.1.S1_x_at--19--8711Chr07:7417411..7417435 (25 bp)
TGTGCGCCGAGCTCGACCTGGCACG
LOC_Os07g12920
OsAffx.24510.1.S1_x_at--690--1771Chr07:7417426..7417450 (25 bp)
ACCTGGCACGCGCTCACGTACGGCA
LOC_Os07g12920
OsAffx.24510.1.S1_x_at--346--1831Chr07:7417441..7417465 (25 bp)
ACGTACGGCACCTCGCCACGGAGGA
LOC_Os07g12920
OsAffx.24510.1.S1_x_at--649--5771Chr07:7417479..7417503 (25 bp)
GACGAGACGGCACGGATGAGGACGC
LOC_Os07g12920
OsAffx.24510.1.S1_x_at--911--8231Chr07:7417487..7417511 (25 bp)
GGCACGGATGAGGACGCAGCTCGTC
LOC_Os07g12920
OsAffx.24510.1.S1_x_at--379--7991Chr07:7417492..7417516 (25 bp)
GGATGAGGACGCAGCTCGTCGAGGA
LOC_Os07g12920
OsAffx.24510.1.S1_x_at--56--1531Chr07:7417537..7417561 (25 bp)
AGCAGAGGGAGAAGGTCGCGGCGAT
LOC_Os07g12920
OsAffx.24510.1.S1_x_at--224--4153Chr07:7417613..7417637 (25 bp)
CGCCGAGAGGGTGAACGCCAAGCTC
LOC_Os07g12920
OsAffx.24510.1.S1_x_at--311--1472Chr07:7417723..7417747 (25 bp)
AGAAGGTCTGCGACAAGCTCGTCAG
LOC_Os07g12920
OsAffx.24510.1.S1_x_at--906--2771Chr07:7417838..7417862 (25 bp)
AAGAGAGGGAGATGCCGCACCTCGC
LOC_Os07g12920
OsAffx.24510.1.S1_x_at--675--5771Chr07:7417864..7417888 (25 bp)
GACGAGCTCCGCAGGCCTTCCGGTG
LOC_Os07g12920
Target Sequence 
TGTGCGCCGAGCTCGACCTGGCACGCGCTCACGTACGGCACCTCGCCACGGAGGACCGGCGGCACGGCGACGAGACGGCA
CGGATGAGGACGCAGCTCGTCGAGGAGGCGCGGGAGTGGAGGAGCCAGCAGAGGGAGAAGGTCGCGGCGATGGTGCGCGT
GGCGGCGGCGGAGCTCGACGGTGAGCAGAGGTCGAGGCGACGCGCCGAGAGGGTGAACGCCAAGCTCGGGAAGGCGCTGG
CCGACGCGGAGAGGGAGCTGGCGGCGTCCCGGAGGGAGCTGGAGAGGGAGAGGAGGTCGAGGGAGCGGCTGGAGAAGGTC
TGCGACAAGCTCGTCAGGGGCGGCCTCGCCTGCGGCGTGGACGACGTCAGGGGAGGCGAGGAGGAGGTGAGGCGGGAGGC
CCAGAGGGGCGCAGGAGGAGCTGGAGAAAGAGAGGGAGATGCCGCACCTCGCCGACGAGCTCCGCAGGCCTTCCGGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24510.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis