Browse Element(s) Details


OsAffx.10206.1.S1_at

Description tigr:9635.m01270
TID=OsAffx.10206.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=cadmium-translocating P-type ATPase, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1290011/11cadmium-translocating P-type ATPase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g12880OsAffx.9930.1.S1_at6/117+7389872..7391182transposon protein, putative, Pong sub-class
LOC_Os07g12890Os.27175.1.S1_a_at10/117+7392790..7396016ZIP zinc/iron transport family protein, expressed
LOC_Os07g12900OsAffx.10206.1.S1_at11/117+7404049..7407857cadmium-translocating P-type ATPase family protein, expressed
LOC_Os07g12910Os.28742.2.S1_at10/117+7412879..7416346PHD finger protein, putative, expressed
LOC_Os07g12910Os.28742.1.S1_at10/117+7412879..7416346PHD finger protein, putative, expressed
LOC_Os07g12920OsAffx.24510.1.S1_x_at11/117+7417152..7418006hypothetical protein
LOC_Os07g12940OsAffx.22429.1.S1_at11/117+7424213..7424729hypothetical protein
LOC_Os07g12950OsAffx.10155.1.S1_at3/117+7426994..7434261transposon protein, putative, Mutator sub-class
LOC_Os07g12950Os.41248.4.S1_x_at2/117+7426994..7434261transposon protein, putative, Mutator sub-class
LOC_Os07g12950OsAffx.15069.1.S1_at1/117+7426994..7434261transposon protein, putative, Mutator sub-class
LOC_Os07g12950OsAffx.10155.1.S1_x_at1/117+7426994..7434261transposon protein, putative, Mutator sub-class
LOC_Os07g12950OsAffx.20187.1.S1_at1/117+7426994..7434261transposon protein, putative, Mutator sub-class
LOC_Os07g12950OsAffx.380.1.S1_at1/117+7426994..7434261transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
GO:0006825biological_processcopper ion transport
GO:0006829biological_processzinc ion transport
GO:0009767biological_processphotosynthetic electron transport
GO:0015691biological_processcadmium ion transport
GO:0005886cellular_componentplasma membrane
GO:0009535cellular_componentthylakoid membrane (sensu Viridiplantae)
GO:0005375molecular_functioncopper ion transporter activity
GO:0005385molecular_functionzinc ion transporter activity
GO:0015086molecular_functioncadmium ion transporter activity
GO:0015434molecular_functioncadmium-transporting ATPase activity
GO:0015662molecular_functionATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.10206.1.S1_at--329--3531Chr07:7404562..7404586 (25 bp)
CATCCGCTGCGGAGCCTCCAAGAAG
LOC_Os07g12900
OsAffx.10206.1.S1_at--54--2571Chr07:7404529..7404553 (25 bp)
AACGGTCGTTGTTGCCAAATGTTGC
LOC_Os07g12900
OsAffx.10206.1.S1_at--53--2571Chr07:7404370..7404394 (25 bp)
AACGGCCGTTGTTGCCAAATGTTGC
LOC_Os07g12900
OsAffx.10206.1.S1_at--594--1771Chr07:7404249..7404273 (25 bp)
ACCGGATGTGGTGCCTCCAAGAGGT
LOC_Os07g12900
OsAffx.10206.1.S1_at--62--4391Chr07:7404182..7404206 (25 bp)
CCAATGGTGTTGGTCGTTGCTGCAC
LOC_Os07g12900
OsAffx.10206.1.S1_at--267--9031Chr07:7404162..7404186 (25 bp)
TGCACGAGCGTGAAGAGGCCAACCT
LOC_Os07g12900
OsAffx.10206.1.S1_at--995--871Chr07:7404147..7404171 (25 bp)
AGGCCAACCTGTTGCGACATGGGAG
LOC_Os07g12900
OsAffx.10206.1.S1_at--688--3251Chr07:7404143..7404167 (25 bp)
CAACCTGTTGCGACATGGGAGCGGC
LOC_Os07g12900
OsAffx.10206.1.S1_at--875--3951Chr07:7404119..7404143 (25 bp)
CGGAGGTGTCCGATTCTTCGCCGGA
LOC_Os07g12900
OsAffx.10206.1.S1_at--1086--4251Chr07:7404099..7404123 (25 bp)
CCGGAGACGGCGAAAGACTGCAGAA
LOC_Os07g12900
OsAffx.10206.1.S1_at--254--2331Chr07:7404087..7404111 (25 bp)
AAAGACTGCAGAAATGGGAGGTGTT
LOC_Os07g12900
Target Sequence 
CATCCGCTGCGGAGCCTCCAAGAAGCCAACTGCAACGGTCGTTGTTGCCAAATGTTGCGGGGGCGGCGGCGGCGGCGAGG
GCACCAGGTGCGGCGCGTCCAAGAATCCGGCAACGGCGGCCGTCGTTGCCAAATGTTGCAGCGGAGGCGGCGGCGAGGGC
ATCGGCTGCGGAGCCTCCAAGAAGCCAACTGCAACGGCCGTTGTTGCCAAATGTTGCGGCGGCGGCGGCGAGGGCACCAG
GTGCGCCGCGTCCAAGAAGCCGGCAACGGCGGCCGTCGTTGCCAAATGTTGCGGTGGCGATGGCGGCGAGGGCACCGGAT
GTGGTGCCTCCAAGAGGTCGCCGCCGGCTGAGGGAAGCTGCAGCGGCGGTGAAGGCGGTACCAATGGTGTTGGTCGTTGC
TGCACGAGCGTGAAGAGGCCAACCTGTTGCGACATGGGAGCGGCGGAGGTGTCCGATTCTTCGCCGGAGACGGCGAAAGA
CTGCAGAAATGGGAGGTGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.10206.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis