Browse Element(s) Details


OsAffx.22429.1.S1_at

Description tigr:9635.m01275
TID=OsAffx.22429.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1294011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g12900OsAffx.10206.1.S1_at11/117+7404049..7407857cadmium-translocating P-type ATPase family protein, expressed
LOC_Os07g12910Os.28742.2.S1_at10/117+7412879..7416346PHD finger protein, putative, expressed
LOC_Os07g12910Os.28742.1.S1_at10/117+7412879..7416346PHD finger protein, putative, expressed
LOC_Os07g12920OsAffx.24510.1.S1_x_at11/117+7417152..7418006hypothetical protein
LOC_Os07g12940OsAffx.22429.1.S1_at11/117+7424213..7424729hypothetical protein
LOC_Os07g12950OsAffx.10155.1.S1_at3/117+7426994..7434261transposon protein, putative, Mutator sub-class
LOC_Os07g12950Os.41248.4.S1_x_at2/117+7426994..7434261transposon protein, putative, Mutator sub-class
LOC_Os07g12950OsAffx.15069.1.S1_at1/117+7426994..7434261transposon protein, putative, Mutator sub-class
LOC_Os07g12950OsAffx.10155.1.S1_x_at1/117+7426994..7434261transposon protein, putative, Mutator sub-class
LOC_Os07g12950OsAffx.20187.1.S1_at1/117+7426994..7434261transposon protein, putative, Mutator sub-class
LOC_Os07g12950OsAffx.380.1.S1_at1/117+7426994..7434261transposon protein, putative, Mutator sub-class
LOC_Os07g12959NANA7+7436149..7437641NA
LOC_Os07g12970NANA7+7439810..7443009hypothetical protein
LOC_Os07g12980OsAffx.22699.1.S1_x_at2/117+7443343..7448725retrotransposon protein, putative, unclassified
LOC_Os07g12980OsAffx.16451.1.A1_x_at2/117+7443343..7448725retrotransposon protein, putative, unclassified
LOC_Os07g12980OsAffx.16451.1.A1_at1/117+7443343..7448725retrotransposon protein, putative, unclassified
LOC_Os07g12980OsAffx.8279.1.S1_at1/117+7443343..7448725retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22429.1.S1_at--697--3871Chr07:7424255..7424526 (25 bp)
CTGTTGTTGCTTTGCTTCGCCTCAG
LOC_Os07g12940
OsAffx.22429.1.S1_at--729--10791Chr07:7424258..7424529 (25 bp)
TTGTTGCTTTGCTTCGCCTCAGCGA
LOC_Os07g12940
OsAffx.22429.1.S1_at--1026--10271Chr07:7424265..7424536 (25 bp)
TTTGCTTCGCCTCAGCGACGAGCTC
LOC_Os07g12940
OsAffx.22429.1.S1_at--1159--8371Chr07:7424573..7424597 (25 bp)
GGCGACGAGCCTGGCATGGAGCGTG
LOC_Os07g12940
OsAffx.22429.1.S1_at--259--4091Chr07:7424578..7424602 (25 bp)
CGAGCCTGGCATGGAGCGTGGTGGA
LOC_Os07g12940
OsAffx.22429.1.S1_at--1036--4071Chr07:7424624..7424648 (25 bp)
CGAGCTCTGGCGTGGAATGTGGATG
LOC_Os07g12940
OsAffx.22429.1.S1_at--1026--8011Chr07:7424651..7424675 (25 bp)
GGAGGATGTGGCTGCACCGGTGATG
LOC_Os07g12940
OsAffx.22429.1.S1_at--283--8491Chr07:7424659..7424683 (25 bp)
TGGCTGCACCGGTGATGATCTCGGT
LOC_Os07g12940
OsAffx.22429.1.S1_at--979--3831Chr07:7424662..7424686 (25 bp)
CTGCACCGGTGATGATCTCGGTCAT
LOC_Os07g12940
OsAffx.22429.1.S1_at--570--5091Chr07:7424664..7424688 (25 bp)
GCACCGGTGATGATCTCGGTCATGG
LOC_Os07g12940
OsAffx.22429.1.S1_at--799--4251Chr07:7424667..7424691 (25 bp)
CCGGTGATGATCTCGGTCATGGGAT
LOC_Os07g12940
Target Sequence 
CTGTTGTTGCTTTGCTTCGCCTCAGCGACGAGCTCCGGCGTGGGGCATGGACAGCGGAGGACGCGGCCACCGGCGACGAG
CCTGGCATGGAGCGTGGTGGAGGAGGACGCGGCTGCTGGTGACGAGCTCTGGCGTGGAATGTGGATGGCGGAGGATGTGG
CTGCACCGGTGATGATCTCGGTCATGGGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22429.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis