Browse Element(s) Details


OsAffx.27166.1.S1_at

Description tigr:9633.m03225
TID=OsAffx.27166.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=cytochrome c (validated) - rice
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3477011/11Cytochrome c, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g34740NANA5+20522157..20522465hypothetical protein
LOC_Os05g34750NANA5+20532111..20535654retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g34760Os.14243.1.S1_at11/115+20537737..20545104expressed protein
LOC_Os05g34760OsAffx.22564.2.S1_at2/115+20537737..20545104expressed protein
LOC_Os05g34770OsAffx.27166.1.S1_at11/115+20546857..20549136Cytochrome c, putative, expressed
LOC_Os05g34770Os.10312.1.S1_at9/115+20546857..20549136Cytochrome c, putative, expressed
LOC_Os05g34770Os.57469.1.S1_x_at8/115+20546857..20549136Cytochrome c, putative, expressed
LOC_Os05g34780Os.27987.1.S1_at10/115+20553243..20560169retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os05g34780Os.38751.1.A1_at8/115+20553243..20560169retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os05g34780OsAffx.8469.1.S1_x_at1/115+20553243..20560169retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os05g34780OsAffx.1197.1.S1_x_at1/115+20553243..20560169retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os05g34790Os.51415.1.S1_at11/115+20563271..20565837GYF domain containing protein, expressed
LOC_Os05g34800Os.51415.2.S1_at11/115+20565099..20567342expressed protein
LOC_Os05g34800OsAffx.24510.1.S1_x_at1/115+20565099..20567342expressed protein
LOC_Os05g34810OsAffx.14964.1.S1_at11/115+20568066..20568638hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0008283biological_processcell proliferation
GO:0005739cellular_componentmitochondrion
GO:0009055molecular_functionelectron carrier activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27166.1.S1_at--996--6551Chr05:20548016..20548040 (25 bp)
GATTAATGATAACGTTGGCCACCTG
LOC_Os05g34770
OsAffx.27166.1.S1_at--315--6611Chr05:20548029..20548053 (25 bp)
GTTGGCCACCTGAGTTCTATAATTT
LOC_Os05g34770
OsAffx.27166.1.S1_at--570--9971Chr05:20548060..20548084 (25 bp)
TAGCCTGCTATTGTTTCCCTCCTTT
LOC_Os05g34770
OsAffx.27166.1.S1_at--939--10351Chr05:20548082..20548106 (25 bp)
TTTTAGCGTGCACAGGGTCGGAACT
LOC_Os05g34770
OsAffx.27166.1.S1_at--744--10211Chr05:20548141..20548165 (25 bp)
TATTCCTGTTGCTTGTGACACTCTA
LOC_Os05g34770
OsAffx.27166.1.S1_at--549--5631Chr05:20548157..20548181 (25 bp)
GACACTCTAGAGTAATCTTCATGCT
LOC_Os05g34770
OsAffx.27166.1.S1_at--789--10051Chr05:20548185..20548209 (25 bp)
TAGTTTTCTGTATTGACCGTCCTTT
LOC_Os05g34770
OsAffx.27166.1.S1_at--150--5551Chr05:20548267..20548291 (25 bp)
GAAACTCAACGTACTTGTGCATGTT
LOC_Os05g34770
OsAffx.27166.1.S1_at--513--7331Chr05:20548283..20548307 (25 bp)
GTGCATGTTTCGCATCGTTATTGTT
LOC_Os05g34770
OsAffx.27166.1.S1_at--83--6831Chr05:20548305..20548329 (25 bp)
GTTTAGTTCACTTCTGATGTACTTT
LOC_Os05g34770
OsAffx.27166.1.S1_at--509--51Chr05:20548489..20548513 (25 bp)
ATTGTTTGTTACTATGATCACTCTG
LOC_Os05g34770
Target Sequence 
GATTAATGATAACGTTGGCCACCTGAGTTCTATAATTTTACTTGTAGCCTGCTATTGTTTCCCTCCTTTTAGCGTGCACA
GGGTCGGAACTAAATGTTGGGGTTTTCCAGCCTGTTGTTATTTTGTATTCCTGTTGCTTGTGACACTCTAGAGTAATCTT
CATGCTATCTAGTTTTCTGTATTGACCGTCCTTTACCATACAAAACTTCAAAACTCTTAAACATGGTTAGAGAGCTTTGT
AATTATCTAGTGAAACTCAACGTACTTGTGCATGTTTCGCATCGTTATTGTTTAGTTCACTTCTGATGTACTTTTTTGGG
TTTCTTAAATATTTTTCCACATGCATGATTTACTGTTTTTGAGCAGTAGTCTCATCAGAATACAATTCTTATTAAAATCA
GTTGATGTTCAGAGCGAATAATCTGAAATAGGCTTAAGGTTAGGAGAACCTGATTCATGTATAATGAGTTCTCATTGTTT
GTTACTATGATCACTCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27166.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis