Browse Element(s) Details


Os.48343.1.A1_at

Description gb:CR281258
DB_XREF= gi:44667824
DB_XREF=CR281258
CLONE=y816g08p3
TID=Os.48343.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.48343 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with moderate similarity to protein ref:NP_176087.1 (A.thaliana) hypothetical protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g346806/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g34660OsAffx.14961.1.S1_at10/115+20481717..20482306hypothetical protein
LOC_Os05g34670Os.18517.1.S1_at11/115+20485736..20490481KH domain-containing quaking protein, putative, expressed
LOC_Os05g34680OsAffx.4518.1.S1_s_at11/115+20497882..20499899expressed protein
LOC_Os05g34680Os.48343.1.A1_at6/115+20497882..20499899expressed protein
LOC_Os05g34690OsAffx.14962.1.S1_at11/115+20500837..20502255hypothetical protein
LOC_Os05g34700Os.18450.1.S1_s_at11/115+20503055..20507752GDSL-motif lipase/hydrolase family protein, putative, expressed
LOC_Os05g34700Os.18450.1.S1_at11/115+20503055..20507752GDSL-motif lipase/hydrolase family protein, putative, expressed
LOC_Os05g34700Os.51561.1.S1_x_at1/115+20503055..20507752GDSL-motif lipase/hydrolase family protein, putative, expressed
LOC_Os05g34700Os.28229.2.S1_x_at1/115+20503055..20507752GDSL-motif lipase/hydrolase family protein, putative, expressed
LOC_Os05g34710Os.51244.1.S1_at11/115+20508160..20508951expressed protein
LOC_Os05g34720Os.27206.1.S1_at10/115+20512490..20515635Uncharacterized ACR, COG1678 family protein, expressed
LOC_Os05g34730OsAffx.27165.1.S1_at11/115+20518075..20518668AP2 domain containing protein, expressed
LOC_Os05g34740NANA5+20522157..20522465hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.48343.1.A1_at--1025--6651NONE
GTTGAGCTTGTGTGTAGAGATTGAA
NONE
Os.48343.1.A1_at--479--431NONE
ATCTTGGCTGACAAGTTTTGCCTGG
NONE
Os.48343.1.A1_at--645--1211NONE
AGTTTTGCCTGGCTGGTCTTCACAG
NONE
Os.48343.1.A1_at--847--7811NONE
GGTCTTCACAGCATTTTCATGGTAT
NONE
Os.48343.1.A1_at--311--2151NONE
ACAGCATTTTCATGGTATTGTAAAG
NONE
Os.48343.1.A1_at--460--171Chr05:20498031..20498064 (25 bp)
ATTTGAACTCAACAGGCCTCCTTAG
LOC_Os05g34680
Os.48343.1.A1_at--725--5491Chr05:20498007..20498031 (25 bp)
GAAAGATCTACTGTATTTTAGTTTT
LOC_Os05g34680
Os.48343.1.A1_at--561--1211Chr05:20497988..20498012 (25 bp)
AGTTTTTGGTGAGTGGCATCCACGA
LOC_Os05g34680
Os.48343.1.A1_at--892--6111Chr05:20497978..20498002 (25 bp)
GAGTGGCATCCACGATGAATGAAAA
LOC_Os05g34680
Os.48343.1.A1_at--983--2411Chr05:20497957..20497981 (25 bp)
AAAACATGGGCTTTAGCTTTGAGGA
LOC_Os05g34680
Os.48343.1.A1_at--645--7491Chr05:20497926..20497950 (25 bp)
GTGGAGGTCTGGAAAACATTATTTT
LOC_Os05g34680
Target Sequence 
GTTGAGCTTGTGTGTAGAGATTGAAGGTCTTCATTGGACAGCAAGAGTATCTTGGCTGACAAGTTTTGCCTGGCTGGTCT
TCACAGCATTTTCATGGTATTGTAAAGAATTTGTTGTATTTGAACTCAACAGGCCTCCTTAGAAAGATCTACTGTATTTT
AGTTTTTGGTGAGTGGCATCCACGATGAATGAAAACATGGGCTTTAGCTTTGAGGATGAAATGTGGAGGTCTGGAAAACA
TTATTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.48343.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis