Browse Element(s) Details


Os.5884.1.S1_at

Description gb:AK071273.1
DB_XREF= gi:32981296
TID=Os.5884.1
CNT=25
FEA=FLmRNA
TIER=FL+Stack
STK=7
UG=Os.5884 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023087G18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023087G18, full insert sequence.
FL= gb:AK058398.1 gb:AK119214.1 gb:AK071273.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3465011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g34610NANA5+20445488..20447786retrotransposon protein, putative, unclassified
LOC_Os05g34620NANA5+20448728..20450065retrotransposon protein, putative, unclassified
LOC_Os05g34630Os.27825.1.S1_at11/115+20453196..20456612hydrolase, alpha/beta fold family protein, putative, expressed
LOC_Os05g34640Os.9567.1.S1_at10/115+20459185..20463878PHD finger protein, putative, expressed
LOC_Os05g34640OsAffx.27164.1.S1_at4/115+20459185..20463878PHD finger protein, putative, expressed
LOC_Os05g34650Os.5884.1.S1_at11/115+20465178..20469909expressed protein
LOC_Os05g34660OsAffx.14961.1.S1_at10/115+20481717..20482306hypothetical protein
LOC_Os05g34670Os.18517.1.S1_at11/115+20485736..20490481KH domain-containing quaking protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009941cellular_componentchloroplast envelope
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5884.1.S1_at--411--5251Chr05:20465792..20465816 (25 bp)
GAATCATTGCTTAACCCTGGACGAG
LOC_Os05g34650
Os.5884.1.S1_at--1013--7471Chr05:20465760..20465784 (25 bp)
GTGTGGAATAGTACCTCAATGACCC
LOC_Os05g34650
Os.5884.1.S1_at--285--5211Chr05:20465681..20465705 (25 bp)
GAATTCGGGCCCTATGTGAGTCAGC
LOC_Os05g34650
Os.5884.1.S1_at--610--7391Chr05:20465666..20465690 (25 bp)
GTGAGTCAGCGAACTTCTTTAACTA
LOC_Os05g34650
Os.5884.1.S1_at--767--651Chr05:20465611..20465635 (25 bp)
ATGCACCGCGCGAGACAGGATGGAT
LOC_Os05g34650
Os.5884.1.S1_at--871--8551Chr05:20465594..20465615 (22 bp)
TGGATGGGTACTTCAACTTTGGAGC
LOC_Os05g34650
Os.5884.1.S1_at--562--6871Chr05:20465335..20465359 (25 bp)
GTATCCGCCATATAGTCGTCGGTGT
LOC_Os05g34650
Os.5884.1.S1_at--513--7431Chr05:20465314..20465338 (25 bp)
GTGTATGTATTGACCGACCTAGTTT
LOC_Os05g34650
Os.5884.1.S1_at--1053--6811Chr05:20465293..20465317 (25 bp)
GTTTTTGTTTCGACTCTACTTTCAT
LOC_Os05g34650
Os.5884.1.S1_at--711--3671Chr05:20465275..20465299 (25 bp)
CTTTCATTGTTTCGGCTAACTTCGC
LOC_Os05g34650
Os.5884.1.S1_at--104--3651Chr05:20465256..20465280 (25 bp)
CTTCGCGAATCTGTTGGTGTTTGTA
LOC_Os05g34650
Target Sequence 
GAATCATTGCTTAACCCTGGACGAGCTCGGTTGTGTGGAATAGTACCTCAATGACCCAATAATATTCGTTTGTTATAGTT
GAATGGATGGTACAATTTTTTTTCATACATCGAATTCGGGCCCTATGTGAGTCAGCGAACTTCTTTAACTAAATCAACCA
TATCGAAGTGAAGTACCTGGCATGCACCGCGCGAGACAGGATGGATGGGTACTTCAACTTTGGAGCGATGTGCAACATCA
TGGGGTATGCTGACTCATGGAAAGACGGGGAAGGAAGGAGAAACTAACCAAAAAAAATACTGGACTAACAAGCTTCTTGT
ATATCTATCTCACTATCTGTATTTAGTACTCTGTATAATGAGACGGGTATCCGCCATATAGTCGTCGGTGTATGTATTGA
CCGACCTAGTTTTTGTTTCGACTCTACTTTCATTGTTTCGGCTAACTTCGCGAATCTGTTGGTGTTTGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5884.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis