Browse Element(s) Details


Os.9567.1.S1_at

Description gb:AK121400.1
DB_XREF= gi:37991023
TID=Os.9567.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.9567 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023131M22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023131M22, full insert sequence.
FL= gb:AK121400.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3464010/11PHD finger protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g34600Os.27216.1.A1_at11/115+20433125..20435812No apical meristem protein, expressed
LOC_Os05g34610NANA5+20445488..20447786retrotransposon protein, putative, unclassified
LOC_Os05g34620NANA5+20448728..20450065retrotransposon protein, putative, unclassified
LOC_Os05g34630Os.27825.1.S1_at11/115+20453196..20456612hydrolase, alpha/beta fold family protein, putative, expressed
LOC_Os05g34640Os.9567.1.S1_at10/115+20459185..20463878PHD finger protein, putative, expressed
LOC_Os05g34640OsAffx.27164.1.S1_at4/115+20459185..20463878PHD finger protein, putative, expressed
LOC_Os05g34650Os.5884.1.S1_at11/115+20465178..20469909expressed protein
LOC_Os05g34660OsAffx.14961.1.S1_at10/115+20481717..20482306hypothetical protein
LOC_Os05g34670Os.18517.1.S1_at11/115+20485736..20490481KH domain-containing quaking protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9567.1.S1_at--403--771Chr05:20463647..20463671 (25 bp)
ATGTCTGCAGATATGGCCTAGCTTT
LOC_Os05g34640
Os.9567.1.S1_at--449--871Chr05:20463659..20463683 (25 bp)
ATGGCCTAGCTTTGTAGCCCGTAGA
LOC_Os05g34640
Os.9567.1.S1_at--51--9951Chr05:20463673..20463697 (25 bp)
TAGCCCGTAGACTTGGTTTTCCATT
LOC_Os05g34640
Os.9567.1.S1_at--83--5691Chr05:20463682..20463706 (25 bp)
GACTTGGTTTTCCATTTCAAATCAA
LOC_Os05g34640
Os.9567.1.S1_at--692--8771Chr05:20463712..20463736 (25 bp)
TGTTAATTTAATCGTGCCCCAGCTG
LOC_Os05g34640
Os.9567.1.S1_at--690--3031Chr05:20463721..20463745 (25 bp)
AATCGTGCCCCAGCTGTTCGTGTTG
LOC_Os05g34640
Os.9567.1.S1_at--422--6711Chr05:20463736..20463760 (25 bp)
GTTCGTGTTGCTCTGACTTTAATTG
LOC_Os05g34640
Os.9567.1.S1_at--1100--4891Chr05:20463762..20463786 (25 bp)
GCTTAAAACTCTTGGTCGCTGTAGT
LOC_Os05g34640
Os.9567.1.S1_at--668--3111Chr05:20463787..20463811 (25 bp)
AATATTAGCTTCATTTCCCTGGTGC
LOC_Os05g34640
Os.9567.1.S1_at--37--4791Chr05:20463813..20463836 (24 bp)
GCTGCCTCTGCAGACATATGTCAAG
LOC_Os05g34640
Os.9567.1.S1_at--87--3131Chr05:20463848..20463965 (25 bp)
AATTGAAGGACTCTCTGACCCTTGT
NONE
Target Sequence 
ATGTCTGCAGATATGGCCTAGCTTTGTAGCCCGTAGACTTGGTTTTCCATTTCAAATCAAAACACTGTTAATTTAATCGT
GCCCCAGCTGTTCGTGTTGCTCTGACTTTAATTGTGCTTAAAACTCTTGGTCGCTGTAGTAATATTAGCTTCATTTCCCT
GGTGCGGCTGCCTCTGCAGACATATGTCAAGACGTTCTTGAATTGAAGGACTCTCTGACCCTTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9567.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis