Browse Element(s) Details


Os.27216.1.A1_at

Description gb:CB655108
DB_XREF= gi:29658833
DB_XREF=OSJNEc08D03.r
CLONE=OSJNEc08D03
TID=Os.27216.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.27216 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with moderate similarity to protein ref:NP_565284.1 (A.thaliana) NAM
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3460011/11No apical meristem protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g34560OsAffx.14960.1.S1_at11/115+20408243..20408855hypothetical protein
LOC_Os05g34560Os.55261.1.S1_at1/115+20408243..20408855hypothetical protein
LOC_Os05g34570Os.24654.2.S1_x_at5/115+20415768..20418536pentatricopeptide, putative
LOC_Os05g34580OsAffx.27162.1.S1_at11/115+20420994..20421639hypothetical protein
LOC_Os05g34590OsAffx.29576.2.S1_x_at1/115+20424114..20425068hypothetical protein
LOC_Os05g34600Os.27216.1.A1_at11/115+20433125..20435812No apical meristem protein, expressed
LOC_Os05g34610NANA5+20445488..20447786retrotransposon protein, putative, unclassified
LOC_Os05g34620NANA5+20448728..20450065retrotransposon protein, putative, unclassified
LOC_Os05g34630Os.27825.1.S1_at11/115+20453196..20456612hydrolase, alpha/beta fold family protein, putative, expressed
LOC_Os05g34640Os.9567.1.S1_at10/115+20459185..20463878PHD finger protein, putative, expressed
LOC_Os05g34640OsAffx.27164.1.S1_at4/115+20459185..20463878PHD finger protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0007275biological_processdevelopment
GO:0009867biological_processjasmonic acid mediated signaling pathway
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27216.1.A1_at--731--4651Chr05:20433619..20433643 (25 bp)
GCGGCGCCTACGGTAATAACCACAT
LOC_Os05g34600
Os.27216.1.A1_at--247--351Chr05:20433604..20433628 (25 bp)
ATAACCACATTGTCGCCGGAAGCCA
LOC_Os05g34600
Os.27216.1.A1_at--430--8631Chr05:20433488..20433512 (25 bp)
TGGGATTGGAGCTCGGTCCCTGACA
LOC_Os05g34600
Os.27216.1.A1_at--350--5731Chr05:20433459..20433483 (25 bp)
GACGGCCAGGGATTACGATTCTTCT
LOC_Os05g34600
Os.27216.1.A1_at--579--6571Chr05:20433443..20433467 (25 bp)
GATTCTTCTGGTTTTAGTGATCCCA
LOC_Os05g34600
Os.27216.1.A1_at--410--9051Chr05:20433385..20433409 (25 bp)
TGCAGATGCTAATCCCAATAGCCAT
LOC_Os05g34600
Os.27216.1.A1_at--154--10491Chr05:20433347..20433371 (25 bp)
TTAACAGTGGCCAGTTTTCTTAGCT
LOC_Os05g34600
Os.27216.1.A1_at--736--10311Chr05:20433332..20433356 (25 bp)
TTTCTTAGCTGTTAATTCACGGTTA
LOC_Os05g34600
Os.27216.1.A1_at--356--2251Chr05:20433300..20433324 (25 bp)
AAATTACCAGTGTGTAGGCTACATA
LOC_Os05g34600
Os.27216.1.A1_at--1012--10191Chr05:20433277..20433301 (25 bp)
TATATATACTCTTCAGCCACTCTAG
LOC_Os05g34600
Os.27216.1.A1_at--208--8771Chr05:20433227..20433251 (25 bp)
TGTATATGACCAACACTTGACGATA
LOC_Os05g34600
Target Sequence 
GCGGCGCCTACGGTAATAACCACATTGTCGCCGGAAGCCATCATCACTTCCCCTTGCCGCCGTCGCAGCTGATGCCACAG
CTCGGCACGCTGCCGATCTCGCCGCCGCTGGCCGCCGTCTCCGACAAGCTCTGGGATTGGAGCTCGGTCCCTGACACGTC
GACGGCCAGGGATTACGATTCTTCTGGTTTTAGTGATCCCAAGTAAAATTAATTAAGCAGGCCTGACAGGATGATGCAGA
TGCTAATCCCAATAGCCATATATATTCAGAATTTAACAGTGGCCAGTTTTCTTAGCTGTTAATTCACGGTTAATTCTGAA
AATTACCAGTGTGTAGGCTACATATATATACTCTTCAGCCACTCTAGAAATNCCATNTATGTCNAGTAGTAGTGTATATG
ACCAACACTTGACGATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27216.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis