Browse Element(s) Details


Os.55261.1.S1_at

Description gb:AK107752.1
DB_XREF= gi:32992961
TID=Os.55261.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55261 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-132-H10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-132-H10, full insert sequence.
FL= gb:AK107752.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g345601/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g34520OsAffx.27160.1.S1_at11/115+20378572..20384642Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os05g34530NANA5+20387983..20388291hypothetical protein
LOC_Os05g34540Os.1321.1.S1_at11/115+20394207..20400478Rab GDP dissociation inhibitor alpha, putative, expressed
LOC_Os05g34540OsAffx.8898.1.S1_at5/115+20394207..20400478Rab GDP dissociation inhibitor alpha, putative, expressed
LOC_Os05g34550Os.26993.1.S1_at11/115+20401808..20406977MLO-like protein 1, putative, expressed
LOC_Os05g34560OsAffx.14960.1.S1_at11/115+20408243..20408855hypothetical protein
LOC_Os05g34560Os.55261.1.S1_at1/115+20408243..20408855hypothetical protein
LOC_Os05g34570Os.24654.2.S1_x_at5/115+20415768..20418536pentatricopeptide, putative
LOC_Os05g34580OsAffx.27162.1.S1_at11/115+20420994..20421639hypothetical protein
LOC_Os05g34590OsAffx.29576.2.S1_x_at1/115+20424114..20425068hypothetical protein
LOC_Os05g34600Os.27216.1.A1_at11/115+20433125..20435812No apical meristem protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55261.1.S1_at--136--3351Chr12:870927..870951 (25 bp)
CACGTCGGGCGTTGAGGAAGCTGCT
NONE
Os.55261.1.S1_at--408--5971Chr12:870997..871021 (25 bp)
GAGAAGATCGTGAAGCTATTTATGG
NONE
Os.55261.1.S1_at--633--7851Chr12:871022..871046 (25 bp)
GGTAGGTGCCTGAGCACATGATGAA
NONE
Os.55261.1.S1_at--831--7511Chr12:871126..871150 (25 bp)
GTGGATCTGTACACCCAGATTTAGG
NONE
Os.55261.1.S1_at--1066--3351Chr12:871137..871161 (25 bp)
CACCCAGATTTAGGCTTGTGACTCT
NONE
Os.55261.1.S1_at--823--10091Chr12:871147..871171 (25 bp)
TAGGCTTGTGACTCTCGAGCTCTTA
NONE
Os.55261.1.S1_at--421--9511Chr12:871159..871183 (25 bp)
TCTCGAGCTCTTACATTGGCTTGTT
NONE
Os.55261.1.S1_at--37--2012Chr12:871171..871195 (25 bp)
ACATTGGCTTGTTTCTAAGGTTTAG
NONE
Os.55261.1.S1_at--972--7871Chr12:871201..871225 (25 bp)
GGTTTTCTACATGTTATATGGGTGT
NONE
Os.55261.1.S1_at--42--272Chr12:871216..871240 (25 bp)
ATATGGGTGTTTCTACAGTTATGAT
NONE
Os.55261.1.S1_at--870--6311Chr12:871238..871262 (25 bp)
GATGACTTTTTATTGAGCTCTTTGT
NONE
Target Sequence 
CACGTCGGGCGTTGAGGAAGCTGCTGTCATCGCCGCCGCCGTTGCTGCTGGTGTAGGTGTGGGCGGAGTAGAGAAGATCG
TGAAGCTATTTATGGGGTAGGTGCCTGAGCACATGATGAAGGTGAAGCTGCTCACCATGTTCCAGGATGTGGCCATCGTC
GACAAGGTCACCGTCATCAAGGACAAGGCCTCTTGTGGTGTGGATCTGTACACCCAGATTTAGGCTTGTGACTCTCGAGC
TCTTACATTGGCTTGTTTCTAAGGTTTAGTTTGGGGTTTTCTACATGTTATATGGGTGTTTCTACAGTTATGATGACTTT
TTATTGAGCTCTTTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55261.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis