Browse Element(s) Details


Os.26993.1.S1_at

Description gb:AK121347.1
DB_XREF= gi:37990970
TID=Os.26993.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.26993 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023121J07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023121J07, full insert sequence.
FL= gb:AK121347.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3455011/11MLO-like protein 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g34520OsAffx.27160.1.S1_at11/115+20378572..20384642Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os05g34530NANA5+20387983..20388291hypothetical protein
LOC_Os05g34540Os.1321.1.S1_at11/115+20394207..20400478Rab GDP dissociation inhibitor alpha, putative, expressed
LOC_Os05g34540OsAffx.8898.1.S1_at5/115+20394207..20400478Rab GDP dissociation inhibitor alpha, putative, expressed
LOC_Os05g34550Os.26993.1.S1_at11/115+20401808..20406977MLO-like protein 1, putative, expressed
LOC_Os05g34560OsAffx.14960.1.S1_at11/115+20408243..20408855hypothetical protein
LOC_Os05g34560Os.55261.1.S1_at1/115+20408243..20408855hypothetical protein
LOC_Os05g34570Os.24654.2.S1_x_at5/115+20415768..20418536pentatricopeptide, putative
LOC_Os05g34580OsAffx.27162.1.S1_at11/115+20420994..20421639hypothetical protein
LOC_Os05g34590OsAffx.29576.2.S1_x_at1/115+20424114..20425068hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0008219biological_processcell death
GO:0005886cellular_componentplasma membrane
GO:0016021cellular_componentintegral to membrane
GO:0005516molecular_functioncalmodulin binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26993.1.S1_at--629--8271Chr05:20402247..20402271 (25 bp)
GGCATGCAGCGTTGGTTAAGGTATA
LOC_Os05g34550
Os.26993.1.S1_at--899--71Chr05:20402211..20402235 (25 bp)
ATTGCTGTGTTGTGGAGCGTTTTGC
LOC_Os05g34550
Os.26993.1.S1_at--123--6291Chr05:20402182..20402206 (25 bp)
GATGTTGTACTTCCTCCCTCTTAAA
LOC_Os05g34550
Os.26993.1.S1_at--1069--5451Chr05:20402139..20402163 (25 bp)
GAACGTGACTTATTCCTAAGACAAC
LOC_Os05g34550
Os.26993.1.S1_at--130--5612Chr08:23938431..23938453 (22 bp)
GACAATGTGACCCATCCAGATTCGT
NONE
Os.26993.1.S1_at--686--6571Chr05:20402089..20402113 (25 bp)
GATTCGTCATTTCAGGATAGGTCAC
LOC_Os05g34550
Os.26993.1.S1_at--738--3911Chr05:20401995..20402019 (25 bp)
CTGGAATGTTGCTGCGTGTGTTCAT
LOC_Os05g34550
Os.26993.1.S1_at--742--7471Chr05:20401980..20402004 (25 bp)
GTGTGTTCATGTGCTATCGTTTTTA
LOC_Os05g34550
Os.26993.1.S1_at--168--10091Chr05:20401955..20401979 (25 bp)
TAGGTAGCCTTTACAGCGTGGTGTT
LOC_Os05g34550
Os.26993.1.S1_at--410--4671Chr05:20401940..20401964 (25 bp)
GCGTGGTGTTTCATATGGTAGCCTT
LOC_Os05g34550
Os.26993.1.S1_at--253--2971Chr05:20401848..20401872 (25 bp)
AATGTGGTGGTTGTGCCCAAAAGCA
LOC_Os05g34550
Target Sequence 
GGCATGCAGCGTTGGTTAAGGTATATAGGTAGTGGAATTGCTGTGTTGTGGAGCGTTTTGCACAAGATGTTGTACTTCCT
CCCTCTTAAAAAGAATCAACCTAGGATAGAACGTGACTTATTCCTAAGACAACGAATCTGGACAATGTGACCCATCCAGA
TTCGTCATTTCAGGATAGGTCACATTCTATCCAAGATTAATTCTTTCTTGGACGGAGAGAGTATGCTGTTTTGATTTTGT
GAACCTGGAAGGCTGGAATGTTGCTGCGTGTGTTCATGTGCTATCGTTTTTATAGGTAGCCTTTACAGCGTGGTGTTTCA
TATGGTAGCCTTGTGTTTCTTTTCTTTCTTTTCTTTTTTTTGGAAAAAGGCCTTATGTTTCATATGGTACTAAGGTGATA
ATGTGGTGGTTGTGCCCAAAAGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26993.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis