Browse Element(s) Details


Os.24654.2.S1_x_at

Description gb:AK071786.1
DB_XREF= gi:32981809
TID=Os.24654.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.24654 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023107P22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023107P22, full insert sequence.
FL= gb:AK071786.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4393411/11pentatricopeptide, putative, expressed
LOC_Os05g345705/11pentatricopeptide, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g43890Os.12269.2.A1_at11/1111+25994866..25997529expressed protein
LOC_Os11g43900Os.6.1.S1_a_at11/1111+26004130..26006355Translationally-controlled tumor protein homolog, putative, expressed
LOC_Os11g43900Os.6.1.S1_x_at9/1111+26004130..26006355Translationally-controlled tumor protein homolog, putative, expressed
LOC_Os11g43910NANA11+26007706..26008029hypothetical protein
LOC_Os11g43920OsAffx.7401.1.S1_at11/1111+26011205..26011724hypothetical protein
LOC_Os11g43934Os.24654.2.S1_x_at11/1111+26018150..26024227pentatricopeptide, putative, expressed
LOC_Os11g43934Os.24654.1.S1_at10/1111+26018150..26024227pentatricopeptide, putative, expressed
LOC_Os11g43934OsAffx.16132.1.S1_at1/1111+26018150..26024227pentatricopeptide, putative, expressed
LOC_Os11g43950Os.27044.1.A1_at11/1111+26036058..26042520expressed protein
LOC_Os11g43960Os.23064.1.S1_at9/1111+26043095..26045690ADP,ATP carrier protein 2, mitochondrial precursor, putative, expressed
LOC_Os11g43970Os.26546.1.S1_at11/1111+26046155..26052730AAA-type ATPase family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24654.2.S1_x_at--195--8371Chr11:26021667..26021691 (25 bp)
TGGGATTCCGTAGCCAAGGTTAGAA
LOC_Os11g43934
Os.24654.2.S1_x_at--269--1472Chr11:26021581..26021605 (25 bp)
AGAATTCCGTTTGTTTCATGCTGGG
LOC_Os11g43934
Os.24654.2.S1_x_at--742--7673Chr08:15223952..15224353 (25 bp)
GGGTTATGTTCCTGATACTAGTTCT
NONE
Os.24654.2.S1_x_at--1084--2432Chr11:26021435..26021459 (25 bp)
AAAAGGAGCACCATCTCTTCTTGCA
LOC_Os11g43934
Os.24654.2.S1_x_at--771--7931Chr11:26021385..26021409 (25 bp)
GGATTAATCAAGTCTCCTCCAGGGT
LOC_Os11g43934
Os.24654.2.S1_x_at--453--2751Chr11:26021343..26021367 (25 bp)
AAGAACCTTCGGGTCTGTGTGGACT
LOC_Os11g43934
Os.24654.2.S1_x_at--296--9812Chr11:26021288..26021312 (25 bp)
TAACCCATCGGAAGATCGTTGTGCG
LOC_Os11g43934
Os.24654.2.S1_x_at--645--6052Chr11:26021264..26021288 (25 bp)
GAGATTCTAGTCGTTTTCACCATTT
LOC_Os11g43934
Os.24654.2.S1_x_at--12--2912Chr11:26021202..26021226 (25 bp)
AAGGTCTGCTGATGTCCAGTTGTGC
LOC_Os11g43934
Os.24654.2.S1_x_at--198--1251Chr11:26021185..26021209 (25 bp)
AGTTGTGCTTCCAGTCTTCTAGAAC
LOC_Os11g43934
Os.24654.2.S1_x_at--292--10011Chr11:26021166..26021190 (25 bp)
TAGAACTCTAGGTATGACATAAGCT
LOC_Os11g43934
Target Sequence 
TGGGATTCCGTAGCCAAGGTTAGAAAGTGCATGATTGGATTGGAGATAAGAAAAGAGCCAGGGTATAGCTGGATTGAAGC
TGGAAGAGAATTCCGTTTGTTTCATGCTGGGGAAGTGCCACTTGATGTTAGAGAAGAAATTATGGTTTTTCTTGAGGAAA
TGGTATTGGAGATGCGCAAAAGGGGTTATGTTCCTGATACTAGTTCTGTGATGCATGACTTGGAAGAAAGCGAAAAGGAG
CACCATCTCTTCTTGCACAGCGAGAGATTGGCTGTTGCTTTTGGATTAATCAAGTCTCCTCCAGGGTCTGTGATCCGGGT
GGTGAAGAACCTTCGGGTCTGTGTGGACTGCCATACAGTAATGAAGTTAATTAGTGAAATAACCCATCGGAAGATCGTTG
TGCGAGATTCTAGTCGTTTTCACCATTTTGAGGGTGGAAAATGCTCTTGTAGTGAATTCTGGTAGAAGGTCTGCTGATGT
CCAGTTGTGCTTCCAGTCTTCTAGAACTCTAGGTATGACATAAGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24654.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis