Browse Element(s) Details


Os.12269.2.A1_at

Description gb:AK109657.1
DB_XREF= gi:32994866
TID=Os.12269.2
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.12269 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-140-F06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-140-F06, full insert sequence.
FL= gb:AK109657.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4389011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g43830Os.54890.1.S1_at11/1111+25968723..25971265Pectinesterase family protein, expressed
LOC_Os11g43840OsAffx.7399.1.S1_at11/1111+25973105..25973643hypothetical protein
LOC_Os11g43850OsAffx.7400.1.S1_at11/1111+25974007..25976099Pectinesterase family protein
LOC_Os11g43850Os.54890.1.S1_at1/1111+25974007..25976099Pectinesterase family protein
LOC_Os11g43860Os.38169.1.S1_at11/1111+25981611..25985603magnesium/proton exchanger, putative, expressed
LOC_Os11g43860Os.38169.1.S1_a_at11/1111+25981611..25985603magnesium/proton exchanger, putative, expressed
LOC_Os11g43860Os.38169.2.S1_at8/1111+25981611..25985603magnesium/proton exchanger, putative, expressed
LOC_Os11g43870Os.20602.2.S1_x_at10/1111+25986362..25988536hAT family dimerisation domain containing protein
LOC_Os11g43880Os.47130.4.A1_x_at4/1111+25990368..25990691retrotransposon protein, putative, unclassified
LOC_Os11g43890Os.12269.2.A1_at11/1111+25994866..25997529expressed protein
LOC_Os11g43900Os.6.1.S1_a_at11/1111+26004130..26006355Translationally-controlled tumor protein homolog, putative, expressed
LOC_Os11g43900Os.6.1.S1_x_at9/1111+26004130..26006355Translationally-controlled tumor protein homolog, putative, expressed
LOC_Os11g43910NANA11+26007706..26008029hypothetical protein
LOC_Os11g43920OsAffx.7401.1.S1_at11/1111+26011205..26011724hypothetical protein
LOC_Os11g43934Os.24654.2.S1_x_at11/1111+26018150..26024227pentatricopeptide, putative, expressed
LOC_Os11g43934Os.24654.1.S1_at10/1111+26018150..26024227pentatricopeptide, putative, expressed
LOC_Os11g43934OsAffx.16132.1.S1_at1/1111+26018150..26024227pentatricopeptide, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0007186biological_processG-protein coupled receptor protein signaling pathway
GO:0009910biological_processnegative regulation of flower development
GO:0005834cellular_componentheterotrimeric G-protein complex
GO:0000166molecular_functionnucleotide binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12269.2.A1_at--999--831Chr11:25996836..25996860 (25 bp)
ATGGAGTCCTGATGGCAAGCTCTTA
LOC_Os11g43890
Os.12269.2.A1_at--160--1591Chr11:25996853..25996877 (25 bp)
AGCTCTTAGCTTGTGGTTCCATGGA
LOC_Os11g43890
Os.12269.2.A1_at--860--7991Chr11:25996875..25996899 (25 bp)
GGATGGCACCATCGCTGTGTATGAC
LOC_Os11g43890
Os.12269.2.A1_at--354--8931Chr11:25996896..25996920 (25 bp)
TGACGCAGTTCGCATGAAGTTCCTC
LOC_Os11g43890
Os.12269.2.A1_at--580--6111Chr11:25996930..25996954 (25 bp)
GAGGGCCATCACATGCCAGTGAGAT
LOC_Os11g43890
Os.12269.2.A1_at--364--6591Chr11:25997005..25997029 (25 bp)
GATTGCCACATCCACATATACGACG
LOC_Os11g43890
Os.12269.2.A1_at--957--2991Chr11:25997194..25997218 (25 bp)
AATGATCAGGTCTGGGCTGTCGCCT
LOC_Os11g43890
Os.12269.2.A1_at--724--8291Chr11:25997255..25997279 (25 bp)
GGCTTGCCAGCGTGTCAGATGACAA
LOC_Os11g43890
Os.12269.2.A1_at--945--2771Chr11:25997278..25997302 (25 bp)
AAGAGCATCACCCTGTACGATTACT
LOC_Os11g43890
Os.12269.2.A1_at--80--5171Chr11:25997318..25997342 (25 bp)
GCAACCTGCAACTTCATTGTAGTCA
LOC_Os11g43890
Os.12269.2.A1_at--1106--8751Chr11:25997335..25997359 (25 bp)
TGTAGTCAGCTGTTTCCAACTTGCA
LOC_Os11g43890
Target Sequence 
ATGGAGTCCTGATGGCAAGCTCTTAGCTTGTGGTTCCATGGATGGCACCATCGCTGTGTATGACGCAGTTCGCATGAAGT
TCCTCCACCACCCTGAGGGCCATCACATGCCAGTGAGATCAATGGTGTTCTCTCCAGTGGACCCGCACGTGCTCTTCACT
GCCTCCGACGATTGCCACATCCACATATACGACGCCAAGGAGAAGAGCCTCATTGGGGCCATGTCAGGGCATGCGAGCTG
GGTGCTGAGCATCGACGTGAGCCCAGACGGCATGGCGGTAGCGACAGGCTCCAGTGACCGCACGGTCCGGCTTTGGGACA
TCAACACGAGGGCGTCGGTGCAGACGATGAGCAACCACAATGATCAGGTCTGGGCTGTCGCCTTCCGACCACCGGGTGGG
ACAGGAGTCCGCGCAGGCCGGCTTGCCAGCGTGTCAGATGACAAGAGCATCACCCTGTACGATTACTCATAGTTTTAACA
CTGCAACCTGCAACTTCATTGTAGTCAGCTGTTTCCAACTTGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12269.2.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis