Browse Element(s) Details


Os.38169.1.S1_at

Description gb:AK066709.1
DB_XREF= gi:32976727
TID=Os.38169.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.38169 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013074O18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013074O18, full insert sequence.
FL= gb:AK066709.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4386011/11magnesium/proton exchanger, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g43810Os.27102.1.S1_x_at1/1111+25957958..25958965hypothetical protein
LOC_Os11g43820Os.10557.1.S1_at11/1111+25961661..25966459Myristoyl-acyl carrier protein thioesterase, chloroplast precursor, putative, expressed
LOC_Os11g43830Os.54890.1.S1_at11/1111+25968723..25971265Pectinesterase family protein, expressed
LOC_Os11g43840OsAffx.7399.1.S1_at11/1111+25973105..25973643hypothetical protein
LOC_Os11g43850OsAffx.7400.1.S1_at11/1111+25974007..25976099Pectinesterase family protein
LOC_Os11g43850Os.54890.1.S1_at1/1111+25974007..25976099Pectinesterase family protein
LOC_Os11g43860Os.38169.1.S1_at11/1111+25981611..25985603magnesium/proton exchanger, putative, expressed
LOC_Os11g43860Os.38169.1.S1_a_at11/1111+25981611..25985603magnesium/proton exchanger, putative, expressed
LOC_Os11g43860Os.38169.2.S1_at8/1111+25981611..25985603magnesium/proton exchanger, putative, expressed
LOC_Os11g43870Os.20602.2.S1_x_at10/1111+25986362..25988536hAT family dimerisation domain containing protein
LOC_Os11g43880Os.47130.4.A1_x_at4/1111+25990368..25990691retrotransposon protein, putative, unclassified
LOC_Os11g43890Os.12269.2.A1_at11/1111+25994866..25997529expressed protein
LOC_Os11g43900Os.6.1.S1_a_at11/1111+26004130..26006355Translationally-controlled tumor protein homolog, putative, expressed
LOC_Os11g43900Os.6.1.S1_x_at9/1111+26004130..26006355Translationally-controlled tumor protein homolog, putative, expressed
LOC_Os11g43910NANA11+26007706..26008029hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006812biological_processcation transport
GO:0006829biological_processzinc ion transport
GO:0015693biological_processmagnesium ion transport
GO:0005774cellular_componentvacuolar membrane
GO:0005432molecular_functioncalcium:sodium antiporter activity
GO:0015491molecular_functioncation:cation antiporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.38169.1.S1_at--125--10211Chr11:25982059..25982083 (25 bp)
TATTTTGTCTACCAGAAGCCCCTGT
LOC_Os11g43860
Os.38169.1.S1_at--944--8732Chr11:25982037..25982061 (25 bp)
TGTACATAGACAATGCTGCTGGCCT
LOC_Os11g43860
Os.38169.1.S1_at--956--10631Chr11:25981990..25982014 (25 bp)
TTCGCGACGTCATTCGGTTGCATCA
LOC_Os11g43860
Os.38169.1.S1_at--363--7912Chr11:25981975..25981999 (25 bp)
GGTTGCATCACGGTTTTGGTTCTTC
LOC_Os11g43860
Os.38169.1.S1_at--149--10872Chr11:25981960..25981984 (25 bp)
TTGGTTCTTCGTCGCGTCATACTTG
LOC_Os11g43860
Os.38169.1.S1_at--604--332Chr11:25981942..25981966 (25 bp)
ATACTTGGCGCCGAGCTTGGTGGCC
LOC_Os11g43860
Os.38169.1.S1_at--687--7592Chr11:25981908..25981932 (25 bp)
GGGCTTGGGCAACATCAGTGTACTT
LOC_Os11g43860
Os.38169.1.S1_at--311--1092Chr11:25981892..25981916 (25 bp)
AGTGTACTTCATGATCCTTTGGGTT
LOC_Os11g43860
Os.38169.1.S1_at--641--9551Chr11:25981866..25981890 (25 bp)
TCTTTGTTGTACTTTCATCCTTAAA
LOC_Os11g43860
Os.38169.1.S1_at--162--311Chr11:25981804..25981828 (25 bp)
ATAGCTGTAGTTCTTCATTCTTTTC
LOC_Os11g43860
Os.38169.1.S1_at--738--5291Chr11:25981715..25981739 (25 bp)
GAAGGCCGACCAAAGTTAGTCATCA
LOC_Os11g43860
Target Sequence 
TATTTTGTCTACCAGAAGCCCCTGTACATAGACAATGCTGCTGGCCTCAGCTTCTCCCTTCTGGTCTTCTTCGCGACGTC
ATTCGGTTGCATCACGGTTTTGGTTCTTCGTCGCGTCATACTTGGCGCCGAGCTTGGTGGCCCTAGGATGTGGGCTTGGG
CAACATCAGTGTACTTCATGATCCTTTGGGTTGTCTTTGTTGTACTTTCATCCTTAAAAATCTCTGGAGTAATATAGATT
ACCTACAAAGTATATATAGCTGTAGTTCTTCATTCTTTTCTATATCTATCTCTTATGGTTTTCTTTTTATATATACATGG
CCATTTTTACACACAGGAAATGTAGAAGGCCGACCAAAGTTAGTCATCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.38169.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis