Browse Element(s) Details


OsAffx.27162.1.S1_at

Description tigr:9633.m03205
TID=OsAffx.27162.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3458011/11hypothetical protein
LOC_Os04g141001/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g34540Os.1321.1.S1_at11/115+20394207..20400478Rab GDP dissociation inhibitor alpha, putative, expressed
LOC_Os05g34540OsAffx.8898.1.S1_at5/115+20394207..20400478Rab GDP dissociation inhibitor alpha, putative, expressed
LOC_Os05g34550Os.26993.1.S1_at11/115+20401808..20406977MLO-like protein 1, putative, expressed
LOC_Os05g34560OsAffx.14960.1.S1_at11/115+20408243..20408855hypothetical protein
LOC_Os05g34560Os.55261.1.S1_at1/115+20408243..20408855hypothetical protein
LOC_Os05g34570Os.24654.2.S1_x_at5/115+20415768..20418536pentatricopeptide, putative
LOC_Os05g34580OsAffx.27162.1.S1_at11/115+20420994..20421639hypothetical protein
LOC_Os05g34590OsAffx.29576.2.S1_x_at1/115+20424114..20425068hypothetical protein
LOC_Os05g34600Os.27216.1.A1_at11/115+20433125..20435812No apical meristem protein, expressed
LOC_Os05g34610NANA5+20445488..20447786retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27162.1.S1_at--317--4612Chr05:20421037..20421061 (25 bp)
GCGACGATGGAGACCCACGACTGAA
LOC_Os05g34580
OsAffx.27162.1.S1_at--813--5991Chr05:20421046..20421070 (25 bp)
GAGACCCACGACTGAAGCGAAGCCA
LOC_Os05g34580
OsAffx.27162.1.S1_at--22--4111Chr05:20421054..20421078 (25 bp)
CGACTGAAGCGAAGCCAGCTAGCTC
LOC_Os05g34580
OsAffx.27162.1.S1_at--597--1571Chr05:20421070..20421094 (25 bp)
AGCTAGCTCGTGTTGCACGGTGCAC
LOC_Os05g34580
OsAffx.27162.1.S1_at--279--3991Chr05:20421078..20421102 (25 bp)
CGTGTTGCACGGTGCACTAGTCTAA
LOC_Os05g34580
OsAffx.27162.1.S1_at--213--5111Chr05:20421091..20421112 (22 bp)
GCACTAGTCTAAGCGAGAGATGGGT
LOC_Os05g34580
OsAffx.27162.1.S1_at--303--6011Chr05:20421105..20421403 (25 bp)
GAGAGATGGGTATTTCGCCAGATAC
LOC_Os05g34580
OsAffx.27162.1.S1_at--668--10191Chr05:20421389..20421413 (25 bp)
TATTTCGCCAGATACCCAGAGCGGA
LOC_Os05g34580
OsAffx.27162.1.S1_at--420--3391Chr05:20421434..20421458 (25 bp)
CAGCGACTAAGGCAGACGCTCTGAT
LOC_Os05g34580
OsAffx.27162.1.S1_at--534--1131Chr05:20421560..20421584 (25 bp)
AGTGCCCCAGTACCGATGCAAAGTA
LOC_Os05g34580
OsAffx.27162.1.S1_at--204--3293Chr05:20421578..20421602 (25 bp)
CAAAGTACCAGGTGATTGATCGATT
LOC_Os05g34580
Target Sequence 
GCGACGATGGAGACCCACGACTGAAGCGAAGCCAGCTAGCTCGTGTTGCACGGTGCACTAGTCTAAGCGAGAGATGGGTA
TTTCGCCAGATACCCAGAGCGGACGACGCGTGTGACGTGGCGGCAGCGACTAAGGCAGACGCTCTGATGGCGAGGACGCT
GCTCATGATGTCGTGCGTGGCGCGTCTCGACGACGAGGACATAGGGACCGGAGGCAACGTGGATAAGGCGTGGCGACGAG
CAGGTGGCCAGTGCCCCAGTACCGATGCAAAGTACCAGGTGATTGATCGATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27162.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis