Browse Element(s) Details


OsAffx.14960.1.S1_at

Description tigr:9633.m03203
TID=OsAffx.14960.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3456011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g34520OsAffx.27160.1.S1_at11/115+20378572..20384642Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os05g34530NANA5+20387983..20388291hypothetical protein
LOC_Os05g34540Os.1321.1.S1_at11/115+20394207..20400478Rab GDP dissociation inhibitor alpha, putative, expressed
LOC_Os05g34540OsAffx.8898.1.S1_at5/115+20394207..20400478Rab GDP dissociation inhibitor alpha, putative, expressed
LOC_Os05g34550Os.26993.1.S1_at11/115+20401808..20406977MLO-like protein 1, putative, expressed
LOC_Os05g34560OsAffx.14960.1.S1_at11/115+20408243..20408855hypothetical protein
LOC_Os05g34560Os.55261.1.S1_at1/115+20408243..20408855hypothetical protein
LOC_Os05g34570Os.24654.2.S1_x_at5/115+20415768..20418536pentatricopeptide, putative
LOC_Os05g34580OsAffx.27162.1.S1_at11/115+20420994..20421639hypothetical protein
LOC_Os05g34590OsAffx.29576.2.S1_x_at1/115+20424114..20425068hypothetical protein
LOC_Os05g34600Os.27216.1.A1_at11/115+20433125..20435812No apical meristem protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14960.1.S1_at--328--7831Chr05:20408293..20408317 (25 bp)
GGTCACCGTCATCAAAGATAAAGCC
LOC_Os05g34560
OsAffx.14960.1.S1_at--994--371Chr05:20408303..20408325 (23 bp)
ATCAAAGATAAAGCCTCTCGAGGGT
LOC_Os05g34560
OsAffx.14960.1.S1_at--338--1691Chr05:20408314..20408744 (25 bp)
AGCCTCTCGAGGGTATCAAACCCGT
LOC_Os05g34560
OsAffx.14960.1.S1_at--427--371Chr05:20408734..20408758 (25 bp)
ATCAAACCCGTTATGTAGATATCAT
LOC_Os05g34560
OsAffx.14960.1.S1_at--357--6951Chr05:20408748..20408772 (25 bp)
GTAGATATCATGTTCAGCACCATTG
LOC_Os05g34560
OsAffx.14960.1.S1_at--939--10151Chr05:20408753..20408777 (25 bp)
TATCATGTTCAGCACCATTGGTAAC
LOC_Os05g34560
OsAffx.14960.1.S1_at--331--6751Chr05:20408759..20408783 (25 bp)
GTTCAGCACCATTGGTAACCAACAC
LOC_Os05g34560
OsAffx.14960.1.S1_at--763--7831Chr05:20408772..20408796 (25 bp)
GGTAACCAACACAATATCGTGTATT
LOC_Os05g34560
OsAffx.14960.1.S1_at--518--8771Chr05:20408791..20408815 (25 bp)
TGTATTTATACAGTGCCAGCAGCAT
LOC_Os05g34560
OsAffx.14960.1.S1_at--640--331Chr05:20408798..20408822 (25 bp)
ATACAGTGCCAGCAGCATTGATGTC
LOC_Os05g34560
OsAffx.14960.1.S1_at--1074--3451Chr05:20408801..20408825 (25 bp)
CAGTGCCAGCAGCATTGATGTCAAT
LOC_Os05g34560
Target Sequence 
GGTCACCGTCATCAAAGATAAAGCCTCTCGAGGGTATCAAACCCGTTATGTAGATATCATGTTCAGCACCATTGGTAACC
AACACAATATCGTGTATTTATACAGTGCCAGCAGCATTGATGTCAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14960.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis