Browse Element(s) Details


Os.27825.1.S1_at

Description gb:AK067277.1
DB_XREF= gi:32977295
TID=Os.27825.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.27825 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013099K07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013099K07, full insert sequence.
FL= gb:AK067277.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3463011/11hydrolase, alpha/beta fold family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g34600Os.27216.1.A1_at11/115+20433125..20435812No apical meristem protein, expressed
LOC_Os05g34610NANA5+20445488..20447786retrotransposon protein, putative, unclassified
LOC_Os05g34620NANA5+20448728..20450065retrotransposon protein, putative, unclassified
LOC_Os05g34630Os.27825.1.S1_at11/115+20453196..20456612hydrolase, alpha/beta fold family protein, putative, expressed
LOC_Os05g34640Os.9567.1.S1_at10/115+20459185..20463878PHD finger protein, putative, expressed
LOC_Os05g34640OsAffx.27164.1.S1_at4/115+20459185..20463878PHD finger protein, putative, expressed
LOC_Os05g34650Os.5884.1.S1_at11/115+20465178..20469909expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0016787molecular_functionhydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27825.1.S1_at--416--1911Chr05:20453660..20453684 (25 bp)
ACGTGACGCTCCACATGCTGGAGGG
LOC_Os05g34630
Os.27825.1.S1_at--711--9211Chr05:20453651..20453675 (25 bp)
TCCACATGCTGGAGGGCGTCGGCCA
LOC_Os05g34630
Os.27825.1.S1_at--687--9331Chr05:20453532..20453556 (25 bp)
TCGCCGGCGGCTTAATGCTGCTGCA
LOC_Os05g34630
Os.27825.1.S1_at--68--296Chr12:211311..211512 (25 bp)
ATAGTCAACTGCTAGCTCTAAAAAT
NONE
Os.27825.1.S1_at--577--2451Chr05:20453462..20453486 (25 bp)
AAAATTGGCACACCATCCACTGTTA
LOC_Os05g34630
Os.27825.1.S1_at--298--571Chr05:20453448..20453472 (25 bp)
ATCCACTGTTAATCTAATAGTCTAC
LOC_Os05g34630
Os.27825.1.S1_at--1028--391Chr05:20453387..20453411 (25 bp)
ATCAGTACTGTCTTGTAGCCCATAC
LOC_Os05g34630
Os.27825.1.S1_at--416--7131Chr05:20453378..20453402 (25 bp)
GTCTTGTAGCCCATACTACAGCTAA
LOC_Os05g34630
Os.27825.1.S1_at--1069--1531Chr05:20453359..20453383 (25 bp)
AGCTAACAAATCTGTAGCTCTCTTC
LOC_Os05g34630
Os.27825.1.S1_at--448--3731Chr05:20453295..20453319 (25 bp)
CTAATTTAGGAGTGCTAGCTTCATA
LOC_Os05g34630
Os.27825.1.S1_at--105--4871Chr05:20453282..20453306 (25 bp)
GCTAGCTTCATATTGTACTTGCTCT
LOC_Os05g34630
Target Sequence 
ACGTGACGCTCCACATGCTGGAGGGCGTCGGCCACTGCCCCCACGACGACCGCCCGGACCTCGTCCACGCCAAGCTGCTC
CCATGGCTCGACACCCTCCCCTCCACCACCGCGCTGACGCCGGTATCGTCGCCGGCGGCTTAATGCTGCTGCATTTTTTT
AAGAGCAAGTTTAATTGTATAGTCAACTGCTAGCTCTAAAAATTGGCACACCATCCACTGTTAATCTAATAGTCTACACA
TATAATAGTTTCATATAAAAAAATACTATACCAATCAGTACTGTCTTGTAGCCCATACTACAGCTAACAAATCTGTAGCT
CTCTTCTCTCCTCTCCTCTCATCTCTTCTCCATATATGCTTATAGCTAATTTAGGAGTGCTAGCTTCATATTGTACTTGC
TCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27825.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis