Browse Element(s) Details


OsAffx.31639.1.S1_at

Description tigr:9640.m00732
TID=OsAffx.31639.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to 41097-37373
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0800010/11HAD superfamily hydrolase, 5'-Nucleotidase containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g07950Os.52430.1.S1_at11/1112+4031200..4035950transcriptional regulator, Sir2 family protein, expressed
LOC_Os12g07960NANA12+4042302..4042796hypothetical protein
LOC_Os12g07970Os.47939.1.S1_at11/1112+4043466..4046389Major Facilitator Superfamily protein, expressed
LOC_Os12g07980OsAffx.19547.1.S1_at10/1112+4049741..4053293expressed protein
LOC_Os12g07980Os.9259.1.S1_at5/1112+4049741..4053293expressed protein
LOC_Os12g07980OsAffx.9230.1.S1_x_at2/1112+4049741..4053293expressed protein
LOC_Os12g07990OsAffx.23523.4.S1_at10/1112+4055055..4057952Protein kinase domain containing protein
LOC_Os12g07990OsAffx.23523.4.S1_x_at10/1112+4055055..4057952Protein kinase domain containing protein
LOC_Os12g08000OsAffx.31639.1.S1_at10/1112+4059567..4068811HAD superfamily hydrolase, 5'-Nucleotidase containing protein, expressed
LOC_Os12g08010OsAffx.7519.1.S1_at11/1112+4069505..4069912hypothetical protein
LOC_Os12g08020OsAffx.7520.1.S1_at11/1112+4073907..4074511hypothetical protein
LOC_Os12g08030Os.57133.1.S1_at1/1112+4081210..4083892expressed protein
LOC_Os12g08040NANA12+4088698..4089162retrotransposon protein, putative, unclassified
LOC_Os12g08050OsAffx.23523.4.S1_x_at6/1112+4090708..4092044Protein kinase domain containing protein
LOC_Os12g08050OsAffx.23523.4.S1_at6/1112+4090708..4092044Protein kinase domain containing protein
LOC_Os12g08060OsAffx.23523.3.S1_at11/1112+4092623..4096609universal stress protein family protein
LOC_Os12g08060Os.45422.1.S1_x_at2/1112+4092623..4096609universal stress protein family protein

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Gene Ontology Classification
GO idTypeName
GO:0008253molecular_function5'-nucleotidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31639.1.S1_at--227--3371Chr12:4065983..4066007 (25 bp)
CACCTCCCGTAAAGTCCAAGGATGA
LOC_Os12g08000
OsAffx.31639.1.S1_at--309--831NONE
ATGGAATGATCGGTTTCGACTGGGA
NONE
OsAffx.31639.1.S1_at--426--151Chr12:4066980..4067004 (25 bp)
ATTACCTAATACCAATGACCCCAAG
LOC_Os12g08000
OsAffx.31639.1.S1_at--176--691Chr12:4066994..4067162 (25 bp)
ATGACCCCAAGCAGGTTCTGTATGT
LOC_Os12g08000
OsAffx.31639.1.S1_at--134--5711Chr12:4067725..4067749 (25 bp)
GACTATGCAAATTATACCTGAGCTG
LOC_Os12g08000
OsAffx.31639.1.S1_at--936--7691Chr12:4067780..4067931 (25 bp)
GGGTCAATTCGACAGACATTCTCTC
LOC_Os12g08000
OsAffx.31639.1.S1_at--325--111Chr12:4067924..4067948 (25 bp)
ATTCTCTCCTACTGAGTGGTTCTCA
LOC_Os12g08000
OsAffx.31639.1.S1_at--649--2731Chr12:4068561..4068585 (25 bp)
AAGAATTCCCGATTTGCTCGCGAGG
LOC_Os12g08000
OsAffx.31639.1.S1_at--219--3511Chr12:4068696..4068720 (25 bp)
CATGGTTATATACCAGCAGGGCGTC
LOC_Os12g08000
OsAffx.31639.1.S1_at--401--1091Chr12:4068713..4068737 (25 bp)
AGGGCGTCAAACTTGGCTGCTGAGA
LOC_Os12g08000
OsAffx.31639.1.S1_at--729--4331Chr12:4068757..4068781 (25 bp)
CCAGTTGATGGCACATGACTCCGAT
LOC_Os12g08000
Target Sequence 
CACCTCCCGTAAAGTCCAAGGATGAAAAATGTTTAGTTTGGATTGTCGAGGGATGGAATGATCGGTTTCGACTGGGAGGA
GATGTTGGACATCTTCAAAGATTATTACCTAATACCAATGACCCCAAGCAGGTTCTGTATGTGACACATCATATTACCAA
AGAGATGCTCAACAACAAGGCCCAAGGTTGGAAGACTATGCAAATTATACCTGAGCTGGAAAAGGAATTGCAAATTATCA
GAGAACAGGGGTCAATTCGACAGACATTCTCTCCTACTGAGTGGTTCTCAATATGCTTACATGCTACAATGATTAAGGGT
GATTCAGATGTGAGAAGAAAGAAGGGAATGGACAGCGAACGTGAAACTGCTGAAAAGAGGCTAGCTTCAAAGTTTAATGA
TAAATGGGGTCCAGTTATGAAGGCTGGGAATAAGAATTCCCGATTTGCTCGCGAGGTAGAAAGATCAGCATGGTTATATA
CCAGCAGGGCGTCAAACTTGGCTGCTGAGAGATGTTATGAACAATCAGACCAGTTGATGGCACATGACTCCGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31639.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis